Variant report

Variant	rs7103215
Chromosome Location	chr11:120763689-120763690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120753776..120755426-chr11:120761839..120764138,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11218009	1.00[ASN][1000 genomes]
rs11218010	1.00[ASN][1000 genomes]
rs11218012	1.00[ASN][1000 genomes]
rs11218015	1.00[ASN][1000 genomes]
rs11218079	1.00[CEU][hapmap]
rs11600068	1.00[ASN][1000 genomes]
rs11821379	1.00[ASN][1000 genomes]
rs11824263	1.00[ASN][1000 genomes]
rs12270392	1.00[ASN][1000 genomes]
rs12271786	1.00[ASN][1000 genomes]
rs12278106	1.00[ASN][1000 genomes]
rs12278827	1.00[ASN][1000 genomes]
rs12279371	1.00[ASN][1000 genomes]
rs12282146	1.00[ASN][1000 genomes]
rs12286679	1.00[ASN][1000 genomes]
rs12289237	1.00[ASN][1000 genomes]
rs12289238	1.00[ASN][1000 genomes]
rs12289919	1.00[ASN][1000 genomes]
rs12290923	1.00[ASN][1000 genomes]
rs12292138	1.00[ASN][1000 genomes]
rs12294471	1.00[ASN][1000 genomes]
rs17124507	1.00[ASN][1000 genomes]
rs4278523	1.00[ASN][1000 genomes]
rs57090447	1.00[ASN][1000 genomes]
rs57802696	1.00[ASN][1000 genomes]
rs58190380	1.00[ASN][1000 genomes]
rs60967271	1.00[ASN][1000 genomes]
rs7103005	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103391	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103410	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7104632	1.00[ASN][1000 genomes]
rs7104812	1.00[ASN][1000 genomes]
rs7105205	1.00[ASN][1000 genomes]
rs7106024	1.00[ASN][1000 genomes]
rs7113703	1.00[ASN][1000 genomes]
rs7119695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7123614	1.00[ASN][1000 genomes]
rs7125796	1.00[GIH][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs7129234	1.00[GIH][hapmap];0.87[LWK][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs7130412	1.00[ASN][1000 genomes]
rs73578576	1.00[ASN][1000 genomes]
rs73578586	1.00[ASN][1000 genomes]
rs73578591	1.00[ASN][1000 genomes]
rs73578615	1.00[ASN][1000 genomes]
rs7926171	1.00[ASN][1000 genomes]
rs7938287	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7103215	CDH1	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120754800-120783600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120755400-120764800	Weak transcription	Fetal Brain Male	brain
4	chr11:120763400-120764600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:120763400-120765400	Enhancers	GM12878-XiMat	blood
6	chr11:120763400-120765400	Enhancers	HepG2	liver
7	chr11:120763600-120764200	Enhancers	Fetal Kidney	kidney
8	chr11:120763600-120764400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:120763600-120765000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:120763600-120765000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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