Variant report

Variant	rs7106024
Chromosome Location	chr11:120672717-120672718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120530878..120531550-chr11:120672607..120673213,3	K562	blood:
2	chr11:120383743..120384352-chr11:120672127..120672964,2	MCF-7	breast:
3	chr11:120555371..120556243-chr11:120672702..120673511,2	MCF-7	breast:
4	chr11:120627260..120628252-chr11:120672656..120673515,2	MCF-7	breast:
5	chr11:120381849..120382848-chr11:120672666..120673569,4	MCF-7	breast:
6	chr11:120381518..120382464-chr11:120672695..120673248,2	K562	blood:

Variant related genes	Relation type
ENSG00000149403	Chromatin interaction
ENSG00000204306	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11218009	1.00[ASN][1000 genomes]
rs11218010	0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11218012	1.00[ASN][1000 genomes]
rs11218015	1.00[ASN][1000 genomes]
rs11600068	1.00[ASN][1000 genomes]
rs11821379	0.88[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824263	1.00[ASN][1000 genomes]
rs12270392	1.00[ASN][1000 genomes]
rs12271786	1.00[ASN][1000 genomes]
rs12278106	0.88[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278827	1.00[ASN][1000 genomes]
rs12279371	1.00[ASN][1000 genomes]
rs12282146	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12286679	1.00[ASN][1000 genomes]
rs12289237	1.00[ASN][1000 genomes]
rs12289238	1.00[ASN][1000 genomes]
rs12289919	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12290923	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292138	1.00[ASN][1000 genomes]
rs12294471	1.00[ASN][1000 genomes]
rs17124507	1.00[ASN][1000 genomes]
rs4278523	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs57090447	1.00[ASN][1000 genomes]
rs57802696	1.00[ASN][1000 genomes]
rs58190380	1.00[ASN][1000 genomes]
rs60967271	1.00[ASN][1000 genomes]
rs6589842	0.90[AMR][1000 genomes]
rs7103005	1.00[ASN][1000 genomes]
rs7103215	1.00[ASN][1000 genomes]
rs7103391	1.00[ASN][1000 genomes]
rs7103410	1.00[ASN][1000 genomes]
rs7104632	1.00[ASN][1000 genomes]
rs7104812	1.00[ASN][1000 genomes]
rs7105205	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[ASN][1000 genomes]
rs7113703	1.00[ASN][1000 genomes]
rs7119695	1.00[ASN][1000 genomes]
rs7123614	1.00[ASN][1000 genomes]
rs7125796	1.00[ASN][1000 genomes]
rs7129234	1.00[ASN][1000 genomes]
rs7130412	1.00[ASN][1000 genomes]
rs73578576	1.00[ASN][1000 genomes]
rs73578586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73578591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73578615	1.00[ASN][1000 genomes]
rs7926171	1.00[ASN][1000 genomes]
rs7938287	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120668200-120673200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120670400-120672800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:120670400-120672800	Weak transcription	HepG2	liver
4	chr11:120670600-120676400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:120671800-120673400	Weak transcription	Fetal Lung	lung
7	chr11:120672600-120673400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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