Variant report

Variant	rs7926171
Chromosome Location	chr11:120676116-120676117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11218009	1.00[ASN][1000 genomes]
rs11218010	1.00[ASN][1000 genomes]
rs11218012	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11218015	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600068	1.00[ASN][1000 genomes]
rs11821379	1.00[ASN][1000 genomes]
rs11824263	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12270392	1.00[ASN][1000 genomes]
rs12271786	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278106	1.00[ASN][1000 genomes]
rs12278827	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12279371	1.00[ASN][1000 genomes]
rs12282146	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286679	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289237	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289238	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289919	1.00[ASN][1000 genomes]
rs12290923	1.00[ASN][1000 genomes]
rs12292138	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12294471	1.00[ASN][1000 genomes]
rs17124507	1.00[ASN][1000 genomes]
rs4278523	1.00[ASN][1000 genomes]
rs57090447	1.00[ASN][1000 genomes]
rs57802696	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58190380	1.00[ASN][1000 genomes]
rs60967271	1.00[ASN][1000 genomes]
rs6589842	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7103005	1.00[ASN][1000 genomes]
rs7103215	1.00[ASN][1000 genomes]
rs7103391	1.00[ASN][1000 genomes]
rs7103410	1.00[ASN][1000 genomes]
rs7104632	1.00[ASN][1000 genomes]
rs7104812	1.00[ASN][1000 genomes]
rs7105205	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106024	1.00[ASN][1000 genomes]
rs7113703	1.00[ASN][1000 genomes]
rs7119695	1.00[ASN][1000 genomes]
rs7123614	1.00[ASN][1000 genomes]
rs7125796	1.00[ASN][1000 genomes]
rs7129234	1.00[ASN][1000 genomes]
rs7130412	1.00[ASN][1000 genomes]
rs73578576	1.00[ASN][1000 genomes]
rs73578586	1.00[ASN][1000 genomes]
rs73578591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73578615	1.00[ASN][1000 genomes]
rs7938287	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120670600-120676400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120673400-120677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:120673400-120677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:120673600-120678000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:120673600-120687800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:120673600-120687800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
9	chr11:120675200-120678600	Weak transcription	Liver	Liver
10	chr11:120675400-120677600	Weak transcription	HepG2	liver
11	chr11:120676000-120680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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