Variant report

Variant	rs12286152
Chromosome Location	chr11:36579819-36579820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11033700	1.00[AMR][1000 genomes]
rs11033701	1.00[AMR][1000 genomes]
rs11033702	1.00[AMR][1000 genomes]
rs11033704	1.00[AMR][1000 genomes]
rs11033705	1.00[AMR][1000 genomes]
rs11033726	1.00[AMR][1000 genomes]
rs11033740	1.00[AMR][1000 genomes]
rs11033754	1.00[AMR][1000 genomes]
rs11820706	1.00[AMR][1000 genomes]
rs11824427	1.00[AMR][1000 genomes]
rs11825620	1.00[AMR][1000 genomes]
rs11828016	1.00[AMR][1000 genomes]
rs12271060	1.00[AMR][1000 genomes]
rs12271149	1.00[AMR][1000 genomes]
rs12271279	1.00[AMR][1000 genomes]
rs12271312	1.00[AMR][1000 genomes]
rs12272928	1.00[AMR][1000 genomes]
rs12273684	1.00[AMR][1000 genomes]
rs12273796	1.00[AMR][1000 genomes]
rs12274228	1.00[AMR][1000 genomes]
rs12274720	1.00[AMR][1000 genomes]
rs12276673	1.00[AMR][1000 genomes]
rs12277745	1.00[AMR][1000 genomes]
rs12279639	1.00[AMR][1000 genomes]
rs12280515	1.00[AMR][1000 genomes]
rs12280564	1.00[AMR][1000 genomes]
rs12283026	1.00[AMR][1000 genomes]
rs13377317	1.00[AMR][1000 genomes]
rs16929080	1.00[AMR][1000 genomes]
rs16929093	1.00[AMR][1000 genomes]
rs35211174	1.00[AMR][1000 genomes]
rs4150999	1.00[AMR][1000 genomes]
rs4151011	1.00[AMR][1000 genomes]
rs4151030	1.00[AMR][1000 genomes]
rs4151047	1.00[AMR][1000 genomes]
rs57273606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119565	1.00[AMR][1000 genomes]
rs9971624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3376156	chr11:36572626-36580074	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36579000-36580200	Active TSS	K562	blood
2	chr11:36579200-36580000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:36579400-36580000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:36579400-36580000	Enhancers	NHEK	skin
5	chr11:36579400-36580800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:36579600-36580000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:36579600-36580200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:36579600-36582400	Flanking Active TSS	Dnd41	blood
9	chr11:36579800-36580000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr11:36579800-36580200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:36579800-36580200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:36579800-36580400	Enhancers	Liver	Liver
13	chr11:36579800-36580400	Active TSS	Duodenum Mucosa	Duodenum
14	chr11:36579800-36580600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:36579800-36580600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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