Variant report

Variant	rs11820706
Chromosome Location	chr11:36709902-36709903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10219403	0.87[AFR][1000 genomes]
rs11033700	1.00[AMR][1000 genomes]
rs11033701	1.00[AMR][1000 genomes]
rs11033702	1.00[AMR][1000 genomes]
rs11033704	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033705	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033726	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033738	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs11033739	0.87[AFR][1000 genomes]
rs11033740	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033754	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825620	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828016	1.00[AMR][1000 genomes]
rs12271060	1.00[AMR][1000 genomes]
rs12271149	1.00[AMR][1000 genomes]
rs12271279	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12271312	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273684	1.00[AMR][1000 genomes]
rs12273796	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274228	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12274720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276673	1.00[AMR][1000 genomes]
rs12277745	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12277943	0.90[AFR][1000 genomes]
rs12279639	1.00[AMR][1000 genomes]
rs12280515	1.00[AMR][1000 genomes]
rs12280564	1.00[AMR][1000 genomes]
rs12281063	0.82[YRI][hapmap]
rs12283026	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286152	1.00[AMR][1000 genomes]
rs13377317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16929080	1.00[AMR][1000 genomes]
rs16929093	1.00[AMR][1000 genomes]
rs35211174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150999	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4151001	0.82[YRI][hapmap]
rs4151011	1.00[AMR][1000 genomes]
rs4151030	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4151047	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs57273606	1.00[AMR][1000 genomes]
rs6484869	0.82[YRI][hapmap]
rs7119565	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11820706	C11orf74	cis	multi-tissue	Pritchard
rs11820706	LOC119710	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36707600-36710000	Bivalent Enhancer	Fetal Thymus	thymus
2	chr11:36707800-36713600	Weak transcription	Fetal Lung	lung
3	chr11:36708000-36715200	Enhancers	Dnd41	blood
4	chr11:36708800-36710600	Enhancers	Fetal Stomach	stomach
5	chr11:36709400-36710200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr11:36709800-36710200	Flanking Active TSS	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links