Variant report

Variant	rs57273606
Chromosome Location	chr11:36572688-36572689
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11033700	1.00[AMR][1000 genomes]
rs11033701	1.00[AMR][1000 genomes]
rs11033702	1.00[AMR][1000 genomes]
rs11033704	1.00[AMR][1000 genomes]
rs11033705	1.00[AMR][1000 genomes]
rs11033726	1.00[AMR][1000 genomes]
rs11033740	1.00[AMR][1000 genomes]
rs11033754	1.00[AMR][1000 genomes]
rs11820706	1.00[AMR][1000 genomes]
rs11824427	1.00[AMR][1000 genomes]
rs11825620	1.00[AMR][1000 genomes]
rs11828016	1.00[AMR][1000 genomes]
rs12271060	1.00[AMR][1000 genomes]
rs12271149	1.00[AMR][1000 genomes]
rs12271279	1.00[AMR][1000 genomes]
rs12271312	1.00[AMR][1000 genomes]
rs12272928	1.00[AMR][1000 genomes]
rs12273684	1.00[AMR][1000 genomes]
rs12273796	1.00[AMR][1000 genomes]
rs12274228	1.00[AMR][1000 genomes]
rs12274720	1.00[AMR][1000 genomes]
rs12276673	1.00[AMR][1000 genomes]
rs12277745	1.00[AMR][1000 genomes]
rs12279639	1.00[AMR][1000 genomes]
rs12280515	1.00[AMR][1000 genomes]
rs12280564	1.00[AMR][1000 genomes]
rs12283026	1.00[AMR][1000 genomes]
rs12286152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377317	1.00[AMR][1000 genomes]
rs16929080	1.00[AMR][1000 genomes]
rs16929093	1.00[AMR][1000 genomes]
rs35211174	1.00[AMR][1000 genomes]
rs4150999	1.00[AMR][1000 genomes]
rs4151011	1.00[AMR][1000 genomes]
rs4151030	1.00[AMR][1000 genomes]
rs4151047	1.00[AMR][1000 genomes]
rs7119565	1.00[AMR][1000 genomes]
rs9971624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2760215	chr11:36559278-36573022	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3376156	chr11:36572626-36580074	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36571600-36572800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:36572000-36572800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:36572000-36573000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links