Variant report

Variant	rs16929080
Chromosome Location	chr11:36611598-36611599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:36611552-36612475	SK-N-SH	brain:	n/a	chr11:36612428-36612442

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Variant related genes	Relation type
C11orf74	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11033700	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033702	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11033704	1.00[AMR][1000 genomes]
rs11033705	1.00[AMR][1000 genomes]
rs11033726	1.00[AMR][1000 genomes]
rs11033740	1.00[AMR][1000 genomes]
rs11033754	1.00[AMR][1000 genomes]
rs11820706	1.00[AMR][1000 genomes]
rs11824427	1.00[AMR][1000 genomes]
rs11825620	1.00[AMR][1000 genomes]
rs11828016	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271060	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271279	1.00[AMR][1000 genomes]
rs12271312	1.00[AMR][1000 genomes]
rs12272928	1.00[AMR][1000 genomes]
rs12273684	1.00[AMR][1000 genomes]
rs12273796	1.00[AMR][1000 genomes]
rs12274228	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274720	1.00[AMR][1000 genomes]
rs12276673	1.00[AMR][1000 genomes]
rs12277745	1.00[AMR][1000 genomes]
rs12279639	1.00[AMR][1000 genomes]
rs12280515	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280564	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283026	1.00[AMR][1000 genomes]
rs12286152	1.00[AMR][1000 genomes]
rs13377317	1.00[AMR][1000 genomes]
rs16929093	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35211174	1.00[AMR][1000 genomes]
rs4150999	1.00[AMR][1000 genomes]
rs4151011	1.00[AMR][1000 genomes]
rs4151030	1.00[AMR][1000 genomes]
rs4151047	1.00[AMR][1000 genomes]
rs57273606	1.00[AMR][1000 genomes]
rs7119565	1.00[AMR][1000 genomes]
rs9971624	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16929080	C11orf74	cis	multi-tissue	Pritchard
rs16929080	LOC119710	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36611000-36611600	Weak transcription	Dnd41	blood
2	chr11:36611400-36612000	Active TSS	Thymus	Thymus
3	chr11:36611400-36616800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus

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