Variant report

Variant	rs12288272
Chromosome Location	chr11:15872658-15872659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11023735	1.00[EUR][1000 genomes]
rs11023741	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11023743	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273166	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276879	1.00[EUR][1000 genomes]
rs12284901	1.00[EUR][1000 genomes]
rs12293229	0.83[AMR][1000 genomes]
rs16932222	1.00[EUR][1000 genomes]
rs58443408	1.00[EUR][1000 genomes]
rs6486266	0.96[EUR][1000 genomes]
rs7107809	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109948	1.00[EUR][1000 genomes]
rs7111705	0.96[EUR][1000 genomes]
rs7124200	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72862164	0.96[EUR][1000 genomes]
rs72862167	1.00[EUR][1000 genomes]
rs72862178	1.00[EUR][1000 genomes]
rs72862180	1.00[EUR][1000 genomes]
rs920497	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15865600-15873000	Weak transcription	Right Atrium	heart
2	chr11:15866800-15877800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:15867200-15873200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:15868400-15875000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:15869800-15873800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:15870200-15873200	Enhancers	Fetal Intestine Large	intestine
7	chr11:15870400-15873200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:15870400-15873800	Enhancers	Fetal Lung	lung
9	chr11:15870800-15873600	Enhancers	Fetal Brain Male	brain
10	chr11:15871400-15872800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:15871600-15873400	Enhancers	Fetal Muscle Leg	muscle
12	chr11:15871600-15873800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:15871800-15873000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:15871800-15873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:15872000-15873000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:15872200-15873200	Enhancers	Fetal Intestine Small	intestine
17	chr11:15872400-15872800	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:15872400-15873000	Enhancers	Adipose Nuclei	Adipose
19	chr11:15872400-15873200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:15872400-15873200	Enhancers	Fetal Stomach	stomach
21	chr11:15872400-15873400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:15872400-15873400	Enhancers	Brain Germinal Matrix	brain
23	chr11:15872400-15873400	Enhancers	Left Ventricle	heart
24	chr11:15872400-15873400	Enhancers	Psoas Muscle	Psoas
25	chr11:15872400-15873800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:15872400-15875000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:15872600-15872800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:15872600-15872800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
29	chr11:15872600-15873200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:15872600-15873200	Enhancers	Aorta	Aorta
31	chr11:15872600-15873400	Enhancers	Placenta	Placenta
32	chr11:15872600-15873600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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