Variant report

Variant	rs6486266
Chromosome Location	chr11:15863020-15863021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11023735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11023741	0.92[EUR][1000 genomes]
rs11023743	0.96[EUR][1000 genomes]
rs12273166	0.96[EUR][1000 genomes]
rs12275305	0.83[AFR][1000 genomes]
rs12276879	0.96[EUR][1000 genomes]
rs12284901	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12288272	0.96[EUR][1000 genomes]
rs12294831	0.83[AFR][1000 genomes]
rs16932222	0.96[EUR][1000 genomes]
rs58443408	0.96[EUR][1000 genomes]
rs7107809	0.96[EUR][1000 genomes]
rs7109948	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7111705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7124200	0.96[EUR][1000 genomes]
rs72862164	1.00[EUR][1000 genomes]
rs72862167	0.96[EUR][1000 genomes]
rs72862178	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72862180	0.96[EUR][1000 genomes]
rs7949090	0.83[AFR][1000 genomes]
rs920497	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15853000-15866600	Weak transcription	Left Ventricle	heart
2	chr11:15854200-15866600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:15858000-15865000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:15858800-15865200	Weak transcription	Psoas Muscle	Psoas
5	chr11:15860800-15868000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:15861000-15864800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15861400-15863400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:15861400-15864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:15862200-15864600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:15862200-15864800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:15862200-15865200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:15862200-15865400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:15862600-15863200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:15862600-15863400	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:15862600-15863400	Enhancers	Fetal Intestine Large	intestine
16	chr11:15862600-15866000	Enhancers	Fetal Muscle Leg	muscle
17	chr11:15862800-15863200	Weak transcription	Small Intestine	intestine
18	chr11:15862800-15863600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:15862800-15864000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:15862800-15864200	Enhancers	Fetal Intestine Small	intestine
21	chr11:15862800-15866400	Enhancers	Fetal Lung	lung
22	chr11:15862800-15866800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:15863000-15863400	Weak transcription	Fetal Brain Male	brain
24	chr11:15863000-15864000	Enhancers	NHEK	skin
25	chr11:15863000-15864200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:15863000-15868400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links