Variant report

Variant	rs16932222
Chromosome Location	chr11:15875437-15875438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11023735	1.00[EUR][1000 genomes]
rs11023741	0.96[EUR][1000 genomes]
rs11023743	1.00[EUR][1000 genomes]
rs12273166	1.00[EUR][1000 genomes]
rs12276879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284901	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288272	1.00[EUR][1000 genomes]
rs4627036	1.00[JPT][hapmap]
rs58443408	1.00[EUR][1000 genomes]
rs6486266	0.96[EUR][1000 genomes]
rs7107809	1.00[EUR][1000 genomes]
rs7109948	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111705	0.96[EUR][1000 genomes]
rs7124200	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862164	0.96[EUR][1000 genomes]
rs72862167	1.00[EUR][1000 genomes]
rs72862178	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862180	1.00[EUR][1000 genomes]
rs920497	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16932222	HSPA6	trans	brain	seeQTL
rs16932222	DHDH	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15866800-15877800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:15873400-15882800	Weak transcription	Right Atrium	heart
3	chr11:15875000-15876600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:15875000-15880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:15875200-15876000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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