Variant report

Variant	rs12292708
Chromosome Location	chr11:66966105-66966106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11227704	0.82[AFR][1000 genomes]
rs11227705	0.87[AFR][1000 genomes]
rs11227734	0.84[AFR][1000 genomes]
rs11227739	0.91[AFR][1000 genomes]
rs11227741	0.91[AFR][1000 genomes]
rs11227749	0.84[AFR][1000 genomes]
rs11501507	0.93[AFR][1000 genomes]
rs12270253	0.86[AFR][1000 genomes]
rs12274763	0.81[AFR][1000 genomes]
rs12275826	0.89[AFR][1000 genomes]
rs12282851	0.83[AFR][1000 genomes]
rs12285582	0.84[AFR][1000 genomes]
rs12286106	0.85[AFR][1000 genomes]
rs12286762	0.89[AFR][1000 genomes]
rs12287003	0.82[AFR][1000 genomes]
rs12287355	0.82[AFR][1000 genomes]
rs12287649	0.81[AFR][1000 genomes]
rs12293258	0.82[AFR][1000 genomes]
rs3730309	0.80[AFR][1000 genomes]
rs3730310	0.89[AFR][1000 genomes]
rs4370946	0.86[AFR][1000 genomes]
rs7128315	0.89[AFR][1000 genomes]
rs7478885	0.84[AFR][1000 genomes]
rs7928575	0.84[AFR][1000 genomes]
rs948988	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
5	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
6	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
10	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
15	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
18	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:66953600-66968000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:66953800-66966600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:66953800-66978400	Weak transcription	K562	blood
22	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
23	chr11:66954000-66967200	Weak transcription	Colonic Mucosa	Colon
24	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
26	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:66954400-66966400	Weak transcription	Fetal Brain Female	brain
29	chr11:66954400-66967000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:66954400-66967600	Weak transcription	Brain Anterior Caudate	brain
31	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
32	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:66954800-66975000	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:66956000-66975000	Weak transcription	Spleen	Spleen
35	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
36	chr11:66959000-66970400	Strong transcription	Primary T cells from cord blood	blood
37	chr11:66959600-66968200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:66959600-66969000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:66961000-66969400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:66961200-66969400	Strong transcription	Placenta	Placenta
41	chr11:66961400-66968000	Weak transcription	Gastric	stomach
42	chr11:66962200-66966600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:66962200-66967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:66962400-66966400	Weak transcription	Fetal Lung	lung
46	chr11:66962400-66966800	Weak transcription	HMEC	breast
47	chr11:66962400-66967400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:66962600-66966600	Weak transcription	Liver	Liver
50	chr11:66962600-66966800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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