Variant report

Variant	rs11227705
Chromosome Location	chr11:66906974-66906975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66899050..66903329-chr11:66906859..66910351,4	MCF-7	breast:
2	chr11:66906010..66907548-chr11:66917711..66919928,2	K562	blood:
3	chr11:66906510..66908110-chr11:66912179..66913984,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10128545	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227681	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227708	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227741	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227749	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227754	1.00[AMR][1000 genomes]
rs11501507	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274690	1.00[AMR][1000 genomes]
rs12274763	1.00[AMR][1000 genomes]
rs12275826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282634	0.83[AMR][1000 genomes]
rs12282851	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283056	1.00[AMR][1000 genomes]
rs12284445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287003	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287355	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287649	0.88[AFR][1000 genomes]
rs12290300	1.00[AMR][1000 genomes]
rs12292708	0.87[AFR][1000 genomes]
rs12293258	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294777	1.00[AMR][1000 genomes]
rs3730309	1.00[AMR][1000 genomes]
rs3730310	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4370946	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758504	1.00[AMR][1000 genomes]
rs7111472	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128315	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7478885	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928575	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945629	1.00[AMR][1000 genomes]
rs948988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
6	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
7	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
11	chr11:66891400-66908800	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:66892200-66908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:66893800-66907400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:66894000-66909000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose
22	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:66894600-66909800	Strong transcription	GM12878-XiMat	blood
24	chr11:66895000-66909600	Strong transcription	Dnd41	blood
25	chr11:66895200-66915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:66895600-66911000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:66895800-66911600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:66896000-66907600	Strong transcription	Fetal Lung	lung
30	chr11:66896200-66909800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:66896600-66912800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:66896800-66907400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:66897200-66916000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:66897600-66907800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:66897600-66908000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:66897800-66908800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:66898000-66909600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:66898200-66911800	Strong transcription	Placenta	Placenta
39	chr11:66898200-66913000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:66898400-66915600	Strong transcription	Fetal Intestine Large	intestine
41	chr11:66898800-66907800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:66899000-66907600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:66899200-66908800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr11:66899200-66918400	Weak transcription	Small Intestine	intestine
45	chr11:66899400-66907800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:66899400-66908600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:66899400-66912600	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:66899400-66913200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:66899600-66907600	Strong transcription	HepG2	liver
50	chr11:66899600-66909800	Strong transcription	Liver	Liver

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