Variant report

Variant	rs12275826
Chromosome Location	chr11:66934117-66934118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66817327..66819463-chr11:66933509..66936497,2	MCF-7	breast:
2	chr11:66884015..66889039-chr11:66933134..66935481,4	MCF-7	breast:
3	chr11:66933281..66937072-chr11:67006310..67009809,4	K562	blood:
4	chr11:66930023..66932870-chr11:66933678..66937134,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10128545	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227681	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227708	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227734	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227739	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227749	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227754	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274690	1.00[AMR][1000 genomes]
rs12274763	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282634	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12282851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283056	1.00[AMR][1000 genomes]
rs12284445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284546	0.81[AFR][1000 genomes]
rs12285582	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286106	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287003	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287355	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287649	0.91[AFR][1000 genomes]
rs12290300	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292708	0.89[AFR][1000 genomes]
rs12293258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294777	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4370946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758504	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128315	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7478885	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945629	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs948988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
3	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
4	chr11:66918600-66947200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:66918800-66934600	Weak transcription	HMEC	breast
6	chr11:66918800-66935400	Weak transcription	HSMMtube	muscle
7	chr11:66918800-66936000	Weak transcription	Gastric	stomach
8	chr11:66918800-66947400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:66919400-66934600	Weak transcription	NH-A	brain
11	chr11:66919400-66947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:66919600-66950400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:66919800-66947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:66919800-66947400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:66919800-66947400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:66919800-66949600	Weak transcription	Lung	lung
17	chr11:66920000-66934800	Weak transcription	HepG2	liver
18	chr11:66920000-66947600	Weak transcription	Right Ventricle	heart
19	chr11:66920400-66947200	Weak transcription	Placenta	Placenta
20	chr11:66920400-66947400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:66920800-66941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:66920800-66949200	Weak transcription	Fetal Kidney	kidney
23	chr11:66921200-66945200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:66921200-66946800	Weak transcription	Ovary	ovary
25	chr11:66921400-66935600	Weak transcription	Dnd41	blood
26	chr11:66922000-66938000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:66922400-66934600	Weak transcription	A549	lung
28	chr11:66922600-66947200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:66923000-66934600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:66923000-66934800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:66923000-66940800	Weak transcription	Fetal Stomach	stomach
32	chr11:66923000-66947400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:66923200-66947400	Weak transcription	Thymus	Thymus
34	chr11:66925800-66945200	Weak transcription	Fetal Lung	lung
35	chr11:66926000-66935600	Weak transcription	Brain Anterior Caudate	brain
36	chr11:66926000-66950400	Weak transcription	Brain Germinal Matrix	brain
37	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
38	chr11:66926200-66948400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:66927600-66942000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:66927800-66942200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:66928000-66938600	Weak transcription	Primary B cells from cord blood	blood
43	chr11:66928600-66945000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:66928800-66934800	Weak transcription	Liver	Liver
45	chr11:66929000-66942400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:66929000-66947600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:66929200-66934400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:66929200-66934600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:66929200-66934800	Weak transcription	NHEK	skin
50	chr11:66929200-66934800	Weak transcription	NHLF	lung

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