Variant report

Variant	rs12287355
Chromosome Location	chr11:67014599-67014600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67014012..67018797-chr11:67139535..67143686,6	MCF-7	breast:
2	chr11:66822165..66825158-chr11:67013591..67015993,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175505	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000256514	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10128545	1.00[AMR][1000 genomes]
rs11227681	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227705	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227708	1.00[AMR][1000 genomes]
rs11227734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274690	1.00[AMR][1000 genomes]
rs12274763	1.00[AMR][1000 genomes]
rs12275826	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282634	0.83[AMR][1000 genomes]
rs12282851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283056	1.00[AMR][1000 genomes]
rs12284445	1.00[AMR][1000 genomes]
rs12285582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286106	1.00[AMR][1000 genomes]
rs12286762	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290300	1.00[AMR][1000 genomes]
rs12292708	0.82[AFR][1000 genomes]
rs12293258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294777	1.00[AMR][1000 genomes]
rs3730309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4370946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758504	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111472	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7478885	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928575	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945629	1.00[AMR][1000 genomes]
rs948988	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67009200-67028800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:67009600-67025400	Strong transcription	Fetal Thymus	thymus
3	chr11:67010000-67015400	Strong transcription	NHLF	lung
4	chr11:67010000-67018400	Genic enhancers	Placenta	Placenta
5	chr11:67010000-67020200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:67010000-67025000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:67010000-67026600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:67010200-67015000	Strong transcription	Lung	lung
9	chr11:67010200-67018800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:67010200-67024400	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr11:67010200-67024600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:67010200-67025000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:67010200-67025000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:67010200-67025000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:67010200-67025000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:67010200-67025400	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr11:67010200-67025400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:67010200-67025800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:67010200-67026600	Strong transcription	Fetal Stomach	stomach
20	chr11:67010400-67015200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:67010400-67019000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr11:67010400-67020200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:67010400-67024600	Strong transcription	HUVEC	blood vessel
24	chr11:67010400-67025000	Strong transcription	Fetal Brain Female	brain
25	chr11:67010400-67025000	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:67010400-67025000	Strong transcription	Thymus	Thymus
27	chr11:67010400-67025000	Strong transcription	NH-A	brain
28	chr11:67010400-67026200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:67010600-67014600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:67010600-67015000	Strong transcription	A549	lung
31	chr11:67010600-67015200	Strong transcription	HSMM	muscle
32	chr11:67010600-67015400	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr11:67010600-67015400	Strong transcription	HSMMtube	muscle
34	chr11:67010600-67015600	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:67010600-67015800	Weak transcription	Right Atrium	heart
36	chr11:67010600-67016000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:67010600-67018200	Strong transcription	K562	blood
38	chr11:67010600-67018400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:67010600-67019600	Strong transcription	Primary T cells from cord blood	blood
40	chr11:67010600-67020000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:67010600-67020000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:67010600-67020200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:67010600-67020400	Strong transcription	Fetal Intestine Small	intestine
44	chr11:67010600-67024400	Strong transcription	Psoas Muscle	Psoas
45	chr11:67010600-67024800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:67010600-67025000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:67010600-67025000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:67010600-67025000	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:67010600-67026400	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:67010600-67026600	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links