Variant report

Variant	rs12274690
Chromosome Location	chr11:66863468-66863469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66861242..66864101-chr11:66886609..66888466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10128545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227681	1.00[AMR][1000 genomes]
rs11227704	1.00[AMR][1000 genomes]
rs11227705	1.00[AMR][1000 genomes]
rs11227708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227734	1.00[AMR][1000 genomes]
rs11227739	1.00[AMR][1000 genomes]
rs11227741	1.00[AMR][1000 genomes]
rs11227749	1.00[AMR][1000 genomes]
rs11227754	1.00[AMR][1000 genomes]
rs11501507	1.00[AMR][1000 genomes]
rs12270253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274763	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275826	1.00[AMR][1000 genomes]
rs12282634	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12282851	1.00[AMR][1000 genomes]
rs12283056	1.00[AMR][1000 genomes]
rs12284445	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284546	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs12285582	1.00[AMR][1000 genomes]
rs12286106	1.00[AMR][1000 genomes]
rs12286762	1.00[AMR][1000 genomes]
rs12287003	1.00[AMR][1000 genomes]
rs12287355	1.00[AMR][1000 genomes]
rs12287649	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs12290300	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12293258	1.00[AMR][1000 genomes]
rs12294777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730309	1.00[AMR][1000 genomes]
rs3730310	1.00[AMR][1000 genomes]
rs4370946	1.00[AMR][1000 genomes]
rs61758504	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111472	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128315	1.00[AMR][1000 genomes]
rs7478885	1.00[AMR][1000 genomes]
rs7928575	1.00[AMR][1000 genomes]
rs7945629	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs948988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv975118	chr11:66862674-66874347	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
2	chr11:66861200-66866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:66863000-66866000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:66863000-66867400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:66863000-66870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:66863000-66871200	Weak transcription	K562	blood
7	chr11:66863200-66867600	Weak transcription	Gastric	stomach

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