Variant report

Variant	rs11227754
Chromosome Location	chr11:67028563-67028564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66825035..66827853-chr11:67026247..67029023,2	MCF-7	breast:
2	chr11:67028558..67031077-chr11:67114717..67116735,2	MCF-7	breast:
3	chr11:67028370..67030971-chr11:67119641..67121434,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175482	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10128545	1.00[AMR][1000 genomes]
rs11227681	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227705	1.00[AMR][1000 genomes]
rs11227708	1.00[AMR][1000 genomes]
rs11227734	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227739	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227741	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227749	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270253	1.00[AMR][1000 genomes]
rs12274690	1.00[AMR][1000 genomes]
rs12274763	1.00[AMR][1000 genomes]
rs12275826	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282634	0.83[AMR][1000 genomes]
rs12282851	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283056	1.00[AMR][1000 genomes]
rs12284445	1.00[AMR][1000 genomes]
rs12285582	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286106	1.00[AMR][1000 genomes]
rs12286762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290300	1.00[AMR][1000 genomes]
rs12293258	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294777	1.00[AMR][1000 genomes]
rs3730309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730310	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4370946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758504	1.00[AMR][1000 genomes]
rs7111472	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7478885	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945629	1.00[AMR][1000 genomes]
rs948988	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897798	chr11:67024534-67065858	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv897799	chr11:67024534-67072623	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67009200-67028800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:67022400-67030000	Weak transcription	Fetal Brain Male	brain
3	chr11:67023200-67028800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:67023400-67028800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:67023400-67028800	Weak transcription	Fetal Heart	heart
6	chr11:67023600-67028800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:67023800-67028800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:67023800-67030200	Weak transcription	Fetal Kidney	kidney
9	chr11:67024200-67028600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:67024200-67028800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:67024200-67028800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:67024400-67028600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:67024400-67028600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:67024400-67028600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:67024400-67028800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:67024400-67028800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:67024400-67028800	Weak transcription	Left Ventricle	heart
18	chr11:67024400-67028800	Weak transcription	Psoas Muscle	Psoas
19	chr11:67024400-67028800	Weak transcription	Stomach Mucosa	stomach
20	chr11:67024400-67028800	Weak transcription	GM12878-XiMat	blood
21	chr11:67024400-67034000	Weak transcription	Small Intestine	intestine
22	chr11:67024600-67028600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:67024600-67028600	Weak transcription	Adipose Nuclei	Adipose
24	chr11:67024600-67028600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:67024600-67028600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:67024600-67028600	Weak transcription	HUVEC	blood vessel
27	chr11:67024600-67028800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:67024600-67028800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:67024600-67028800	Weak transcription	Brain Anterior Caudate	brain
30	chr11:67024600-67028800	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:67024800-67028600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:67024800-67028600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:67024800-67028600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:67024800-67028600	Weak transcription	A549	lung
35	chr11:67024800-67028800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:67024800-67028800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:67024800-67028800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:67024800-67028800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:67024800-67028800	Weak transcription	NHDF-Ad	bronchial
40	chr11:67025000-67028600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:67025000-67028600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:67025000-67028600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:67025000-67028600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:67025000-67028600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:67025000-67028600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:67025000-67028600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:67025000-67028600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:67025000-67028600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:67025000-67028600	Weak transcription	HMEC	breast
50	chr11:67025000-67028600	Weak transcription	NH-A	brain

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