Variant report

Variant	rs12282634
Chromosome Location	chr11:66955870-66955871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADRBK1-1	chr11:66955629-66956138	expReg_chr11_6848_+

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10128545	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11227681	0.83[AMR][1000 genomes]
rs11227704	0.83[AMR][1000 genomes]
rs11227705	0.83[AMR][1000 genomes]
rs11227708	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11227734	0.83[AMR][1000 genomes]
rs11227739	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11227741	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11227749	0.83[AMR][1000 genomes]
rs11227754	0.83[AMR][1000 genomes]
rs11501507	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12270253	0.83[AMR][1000 genomes]
rs12274690	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12274763	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12275826	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12282851	0.83[AMR][1000 genomes]
rs12283056	0.83[AMR][1000 genomes]
rs12284445	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12284546	0.84[AFR][1000 genomes]
rs12285582	0.83[AMR][1000 genomes]
rs12286106	0.83[AMR][1000 genomes]
rs12286762	0.83[AMR][1000 genomes]
rs12287003	0.83[AMR][1000 genomes]
rs12287355	0.83[AMR][1000 genomes]
rs12290300	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12293258	0.83[AMR][1000 genomes]
rs12294777	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3730309	0.83[AMR][1000 genomes]
rs3730310	0.83[AMR][1000 genomes]
rs4370946	0.83[AMR][1000 genomes]
rs61758504	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7111472	0.83[AMR][1000 genomes]
rs7128315	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7478885	0.83[AMR][1000 genomes]
rs7928575	0.83[AMR][1000 genomes]
rs7945629	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs948988	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
6	chr11:66936400-66956000	Weak transcription	Fetal Heart	heart
7	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
8	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:66942800-66961000	Weak transcription	Gastric	stomach
10	chr11:66944000-66961200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:66945000-66956200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:66945000-66956600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr11:66945000-66956800	Strong transcription	Dnd41	blood
14	chr11:66945000-66957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:66947000-66956400	Strong transcription	GM12878-XiMat	blood
17	chr11:66947000-66964000	Strong transcription	Fetal Thymus	thymus
18	chr11:66947200-66957200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:66947200-66957600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:66947200-66958400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:66947200-66959400	Strong transcription	Placenta	Placenta
22	chr11:66947400-66956400	Strong transcription	Fetal Lung	lung
23	chr11:66947400-66956600	Strong transcription	HMEC	breast
24	chr11:66947400-66957000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr11:66947400-66958000	Strong transcription	Fetal Intestine Large	intestine
26	chr11:66947600-66958200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:66947600-66958600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:66947600-66963000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:66948200-66962000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
32	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:66948800-66958800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:66949600-66958800	Strong transcription	Fetal Stomach	stomach
35	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:66949800-66957000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:66949800-66957400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:66950800-66957000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:66951200-66965000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
43	chr11:66951400-66957000	Weak transcription	Esophagus	oesophagus
44	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:66952400-66963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:66953400-66957000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:66953400-66961200	Weak transcription	Psoas Muscle	Psoas
49	chr11:66953400-66961400	Weak transcription	NHLF	lung
50	chr11:66953400-66962200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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