Variant report
Variant | rs12307587 |
---|---|
Chromosome Location | chr12:68523471-68523472 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10467156 | 0.83[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs11177072 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs11177073 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11503734 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12302207 | 0.86[AFR][1000 genomes] |
rs12306852 | 0.83[EUR][1000 genomes] |
rs12308338 | 0.83[EUR][1000 genomes] |
rs12310687 | 0.83[EUR][1000 genomes] |
rs12313843 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12318069 | 0.83[EUR][1000 genomes] |
rs12320174 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12321504 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12321565 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs55881326 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs56408274 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs60017528 | 0.82[EUR][1000 genomes] |
rs60079212 | 0.83[EUR][1000 genomes] |
rs61923089 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61923118 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61923119 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs61923151 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7959900 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899220 | chr12:68465709-68530956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:68517200-68525600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |