Variant report

Variant	rs12313843
Chromosome Location	chr12:68592860-68592861
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11177072	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11177073	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11503734	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12306852	0.90[EUR][1000 genomes]
rs12307587	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12308338	0.90[EUR][1000 genomes]
rs12310687	0.90[EUR][1000 genomes]
rs12318069	0.90[EUR][1000 genomes]
rs12320174	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12321504	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12321565	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55881326	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56408274	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60017528	0.89[EUR][1000 genomes]
rs60079212	0.90[EUR][1000 genomes]
rs61923089	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61923118	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61923119	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61923151	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7959900	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847952	chr12:68544896-68693242	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1792301	chr12:68586721-68594956	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68591800-68593600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr12:68592400-68593000	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr12:68592400-68593600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:68592600-68593000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:68592600-68593400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:68592600-68593800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:68592600-68593800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:68592600-68593800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:68592800-68593400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:68592800-68593400	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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