Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11177072	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11177073	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11503734	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12302207	0.82[AFR][1000 genomes]
rs12306852	0.88[EUR][1000 genomes]
rs12307587	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12308338	0.88[EUR][1000 genomes]
rs12310687	0.88[EUR][1000 genomes]
rs12313843	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12318069	0.88[EUR][1000 genomes]
rs12320174	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12321565	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55881326	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56408274	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60017528	0.87[EUR][1000 genomes]
rs60079212	0.88[EUR][1000 genomes]
rs61923089	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61923118	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61923119	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61923151	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7959900	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847952	chr12:68544896-68693242	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68557200-68569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:68566800-68569000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr12:68567200-68569200	Enhancers	Primary T cells from cord blood	blood
4	chr12:68567400-68569000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:68567400-68569200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:68568400-68569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:68568400-68569400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:68568600-68569200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:68568800-68569000	Active TSS	Primary B cells from cord blood	blood
10	chr12:68568800-68569200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr12:68568800-68569200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr12:68568800-68569400	Enhancers	Primary B cells from peripheral blood	blood
13	chr12:68568800-68569400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:68568800-68570400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr12:68568800-68570400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr12:68568800-68572000	Enhancers	Fetal Thymus	thymus

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