Variant report
| Variant | rs12313373 |
|---|---|
| Chromosome Location | chr12:62203637-62203638 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62202859..62205384-chr12:62210206..62212570,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs11174099 | 1.00[EUR][1000 genomes] |
| rs11174121 | 1.00[EUR][1000 genomes] |
| rs11174135 | 1.00[EUR][1000 genomes] |
| rs11174151 | 1.00[EUR][1000 genomes] |
| rs11174156 | 1.00[EUR][1000 genomes] |
| rs11174167 | 1.00[EUR][1000 genomes] |
| rs11174170 | 1.00[EUR][1000 genomes] |
| rs11174171 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11174178 | 1.00[EUR][1000 genomes] |
| rs11174179 | 1.00[EUR][1000 genomes] |
| rs11174206 | 0.84[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12296389 | 0.82[YRI][hapmap] |
| rs12301609 | 1.00[EUR][1000 genomes] |
| rs12301651 | 1.00[EUR][1000 genomes] |
| rs12302070 | 1.00[EUR][1000 genomes] |
| rs12302650 | 1.00[EUR][1000 genomes] |
| rs12305869 | 1.00[EUR][1000 genomes] |
| rs12306721 | 1.00[EUR][1000 genomes] |
| rs12307176 | 1.00[EUR][1000 genomes] |
| rs12307906 | 1.00[EUR][1000 genomes] |
| rs12308834 | 1.00[EUR][1000 genomes] |
| rs12310261 | 1.00[EUR][1000 genomes] |
| rs12310815 | 1.00[EUR][1000 genomes] |
| rs12310971 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12311143 | 1.00[EUR][1000 genomes] |
| rs12312418 | 0.86[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12313937 | 1.00[EUR][1000 genomes] |
| rs12314551 | 1.00[EUR][1000 genomes] |
| rs12315987 | 1.00[EUR][1000 genomes] |
| rs12316239 | 1.00[EUR][1000 genomes] |
| rs12318519 | 0.84[YRI][hapmap] |
| rs12318562 | 0.85[YRI][hapmap] |
| rs12318619 | 0.84[YRI][hapmap] |
| rs12318980 | 0.84[YRI][hapmap] |
| rs12319647 | 1.00[EUR][1000 genomes] |
| rs12319917 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12320238 | 1.00[EUR][1000 genomes] |
| rs12320387 | 1.00[EUR][1000 genomes] |
| rs12320743 | 0.86[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12320922 | 1.00[YRI][hapmap] |
| rs12322039 | 1.00[EUR][1000 genomes] |
| rs2359976 | 1.00[EUR][1000 genomes] |
| rs7137620 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7294889 | 1.00[EUR][1000 genomes] |
| rs7297714 | 1.00[EUR][1000 genomes] |
| rs7299621 | 1.00[EUR][1000 genomes] |
| rs7301639 | 1.00[EUR][1000 genomes] |
| rs7314886 | 1.00[EUR][1000 genomes] |
| rs7980919 | 1.00[EUR][1000 genomes] |
| rs9651985 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899151 | chr12:62108648-62227606 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv977138 | chr12:62199079-62211306 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv11147 | chr12:62199825-62210977 | ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3497041 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3497052 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv2421373 | chr12:62202570-62210820 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv442272 | chr12:62202570-62210820 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv514672 | chr12:62202621-62210789 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
