Variant report

Variant	rs12322134
Chromosome Location	chr12:105646804-105646805
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105629810..105631890-chr12:105644832..105647203,2	MCF-7	breast:
2	chr12:105646719..105649373-chr12:105657582..105659204,2	K562	blood:
3	chr12:105628268..105630407-chr12:105646094..105648967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235162	Chromatin interaction
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10459207	0.87[EUR][1000 genomes]
rs1076	0.80[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs10778370	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861337	0.89[CEU][hapmap]
rs10861342	0.80[CEU][hapmap]
rs10861346	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs10861353	0.88[EUR][1000 genomes]
rs10861354	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs10861355	0.86[EUR][1000 genomes]
rs10861356	0.80[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs10861357	0.80[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs10861358	0.80[CEU][hapmap];0.90[EUR][1000 genomes]
rs10861360	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10861365	0.85[ASN][1000 genomes]
rs10861366	0.82[ASN][1000 genomes]
rs10861368	0.80[ASN][1000 genomes]
rs10861369	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs11112368	0.80[EUR][1000 genomes]
rs11112371	0.87[EUR][1000 genomes]
rs11112373	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11112374	0.88[EUR][1000 genomes]
rs11112378	0.80[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs11112380	0.80[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs11112386	0.87[EUR][1000 genomes]
rs11112390	0.87[EUR][1000 genomes]
rs11112393	0.86[EUR][1000 genomes]
rs11112394	0.80[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs11112396	0.86[EUR][1000 genomes]
rs11112397	0.86[EUR][1000 genomes]
rs11112398	0.87[EUR][1000 genomes]
rs11112403	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs11112413	0.90[EUR][1000 genomes]
rs11112418	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112422	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11112435	0.85[ASN][1000 genomes]
rs11112439	0.80[ASN][1000 genomes]
rs11112441	0.80[ASN][1000 genomes]
rs12227605	0.88[EUR][1000 genomes]
rs12229846	0.89[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs12306463	0.81[ASN][1000 genomes]
rs12316054	0.89[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12320123	0.83[EUR][1000 genomes]
rs1444608	0.87[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs1663563	0.85[JPT][hapmap]
rs2044307	0.80[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs2888841	0.83[EUR][1000 genomes]
rs34705618	0.88[EUR][1000 genomes]
rs3794232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794237	0.85[ASN][1000 genomes]
rs3829297	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs61506525	0.87[EUR][1000 genomes]
rs703683	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs7136344	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs7138073	0.81[ASN][1000 genomes]
rs7305712	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs73395802	0.86[EUR][1000 genomes]
rs7488014	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7955095	0.80[ASN][1000 genomes]
rs7966106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972263	0.80[ASN][1000 genomes]
rs7975125	0.99[ASN][1000 genomes]
rs7975197	0.81[ASN][1000 genomes]
rs9634185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455704	chr12:105583877-105651356	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	nsv560053	chr12:105583877-105651356	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105645800-105648200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:105646200-105647400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105646200-105647800	Enhancers	NHDF-Ad	bronchial
4	chr12:105646400-105647600	Weak transcription	Aorta	Aorta
5	chr12:105646400-105651000	Enhancers	Osteobl	bone
6	chr12:105646600-105647000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:105646600-105647400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:105646600-105647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:105646800-105647000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:105646800-105647600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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