Variant report

Variant	rs7488014
Chromosome Location	chr12:105657527-105657528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105625530..105628305-chr12:105656040..105658851,2	MCF-7	breast:
2	chr12:105615953..105617646-chr12:105655942..105657913,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10459207	0.87[EUR][1000 genomes]
rs1076	0.80[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs10778370	0.88[EUR][1000 genomes]
rs10778376	0.88[ASN][1000 genomes]
rs10778380	0.87[ASN][1000 genomes]
rs10861342	0.80[CEU][hapmap];0.83[TSI][hapmap]
rs10861346	0.80[CEU][hapmap]
rs10861353	0.88[EUR][1000 genomes]
rs10861354	0.80[CEU][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs10861355	0.86[EUR][1000 genomes]
rs10861356	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs10861357	0.80[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs10861358	0.80[CEU][hapmap];0.90[EUR][1000 genomes]
rs10861360	0.80[CEU][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs10861365	0.95[ASN][1000 genomes]
rs10861366	0.93[ASN][1000 genomes]
rs10861368	0.89[ASN][1000 genomes]
rs10861369	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11112368	0.80[EUR][1000 genomes]
rs11112371	0.87[EUR][1000 genomes]
rs11112373	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11112374	0.88[EUR][1000 genomes]
rs11112378	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs11112380	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs11112386	0.87[EUR][1000 genomes]
rs11112390	0.87[EUR][1000 genomes]
rs11112393	0.86[EUR][1000 genomes]
rs11112394	0.80[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs11112396	0.86[EUR][1000 genomes]
rs11112397	0.86[EUR][1000 genomes]
rs11112398	0.87[EUR][1000 genomes]
rs11112403	0.80[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs11112413	0.90[EUR][1000 genomes]
rs11112418	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112422	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11112435	0.96[ASN][1000 genomes]
rs11112439	0.89[ASN][1000 genomes]
rs11112441	0.89[ASN][1000 genomes]
rs12227605	0.88[EUR][1000 genomes]
rs12228302	0.83[ASN][1000 genomes]
rs12229846	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12306463	0.90[ASN][1000 genomes]
rs12315510	0.87[ASN][1000 genomes]
rs12316054	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12320123	0.83[EUR][1000 genomes]
rs12322134	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1444608	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2044307	0.80[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs2888841	0.83[EUR][1000 genomes]
rs34705618	0.88[EUR][1000 genomes]
rs3794232	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3829297	0.80[CEU][hapmap];0.87[EUR][1000 genomes]
rs56043130	0.88[ASN][1000 genomes]
rs61506525	0.87[EUR][1000 genomes]
rs6539199	0.88[ASN][1000 genomes]
rs703683	0.80[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs7134323	0.87[ASN][1000 genomes]
rs7136344	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs7138073	0.90[ASN][1000 genomes]
rs7305712	0.80[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs73181847	0.86[ASN][1000 genomes]
rs73395802	0.86[EUR][1000 genomes]
rs7955095	0.89[ASN][1000 genomes]
rs7966106	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7972263	0.89[ASN][1000 genomes]
rs7975125	0.88[ASN][1000 genomes]
rs7975197	0.90[ASN][1000 genomes]
rs9634185	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105652600-105657800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle
3	chr12:105653400-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:105653400-105661400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:105656600-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:105657200-105661800	Weak transcription	NHDF-Ad	bronchial
7	chr12:105657400-105657600	Enhancers	Esophagus	oesophagus

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