Variant report

Variant	rs11112435
Chromosome Location	chr12:105660043-105660044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10778376	0.92[ASN][1000 genomes]
rs10778380	0.89[ASN][1000 genomes]
rs10861365	0.97[ASN][1000 genomes]
rs10861366	0.95[ASN][1000 genomes]
rs10861368	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10861369	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11112418	0.85[ASN][1000 genomes]
rs11112422	0.83[ASN][1000 genomes]
rs11112439	0.91[ASN][1000 genomes]
rs11112441	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12228302	0.85[ASN][1000 genomes]
rs12301914	0.86[CEU][hapmap]
rs12306463	0.92[ASN][1000 genomes]
rs12311156	0.86[CEU][hapmap]
rs12312965	0.87[CEU][hapmap]
rs12315510	0.89[ASN][1000 genomes]
rs12322134	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs3794232	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs56043130	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6539199	0.92[ASN][1000 genomes]
rs7133728	0.86[CEU][hapmap]
rs7134323	0.89[ASN][1000 genomes]
rs7138073	0.92[ASN][1000 genomes]
rs7302842	0.86[CEU][hapmap]
rs73181847	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7488014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7955095	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7966106	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7971630	0.86[CEU][hapmap]
rs7972263	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7975125	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7975197	0.92[ASN][1000 genomes]
rs7975787	0.87[CEU][hapmap]
rs7978034	0.82[CEU][hapmap]
rs9634185	0.84[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle
2	chr12:105653400-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105653400-105661400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:105656600-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:105657200-105661800	Weak transcription	NHDF-Ad	bronchial
6	chr12:105659600-105672200	Weak transcription	Aorta	Aorta

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