Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10083199	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10778376	0.95[ASN][1000 genomes]
rs10778380	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861365	0.88[ASN][1000 genomes]
rs10861366	0.92[ASN][1000 genomes]
rs10861368	0.96[ASN][1000 genomes]
rs10861369	1.00[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11112435	0.89[ASN][1000 genomes]
rs11112439	0.96[ASN][1000 genomes]
rs11112441	0.96[ASN][1000 genomes]
rs12228302	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12306463	0.97[ASN][1000 genomes]
rs12315510	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322134	0.84[CHB][hapmap]
rs3794232	0.84[CHB][hapmap]
rs56043130	0.95[ASN][1000 genomes]
rs6539199	0.95[ASN][1000 genomes]
rs7138073	0.97[ASN][1000 genomes]
rs7311273	0.86[AMR][1000 genomes]
rs7312484	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181847	0.95[ASN][1000 genomes]
rs7488014	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7955095	0.96[ASN][1000 genomes]
rs7966106	0.84[CHB][hapmap]
rs7972263	0.96[ASN][1000 genomes]
rs7975197	0.97[ASN][1000 genomes]
rs9634185	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105683400-105688600	Weak transcription	NHEK	skin
2	chr12:105686600-105688800	Weak transcription	Stomach Mucosa	stomach
3	chr12:105686600-105689000	Enhancers	Fetal Intestine Small	intestine
4	chr12:105687000-105692200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:105687200-105688400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:105687200-105688600	Weak transcription	A549	lung
7	chr12:105687200-105688600	Weak transcription	Osteobl	bone
8	chr12:105687800-105688600	Weak transcription	Fetal Intestine Large	intestine

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