Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105660954..105663749-chr12:105664178..105665747,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10437893	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10778376	0.95[ASN][1000 genomes]
rs10778380	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10861365	0.88[ASN][1000 genomes]
rs10861366	0.92[ASN][1000 genomes]
rs10861368	0.98[ASN][1000 genomes]
rs10861369	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11112418	0.80[ASN][1000 genomes]
rs11112435	0.91[ASN][1000 genomes]
rs11112441	0.98[ASN][1000 genomes]
rs12228302	0.91[ASN][1000 genomes]
rs12306463	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12315510	0.96[ASN][1000 genomes]
rs12322134	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs3794232	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs56043130	0.97[ASN][1000 genomes]
rs6539199	0.95[ASN][1000 genomes]
rs7134323	0.96[ASN][1000 genomes]
rs7138073	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7294681	1.00[CEU][hapmap]
rs73181847	0.95[ASN][1000 genomes]
rs7488014	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7955095	0.98[ASN][1000 genomes]
rs7966106	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs7972263	0.98[ASN][1000 genomes]
rs7975197	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634185	0.83[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105662200-105663800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:105662200-105663800	Weak transcription	HSMM	muscle
5	chr12:105662400-105663400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:105662400-105663400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:105662400-105663800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:105662400-105664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:105662800-105665000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:105662800-105665600	Enhancers	NHDF-Ad	bronchial
11	chr12:105663000-105663400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:105663000-105663600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:105663000-105664400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:105663000-105665000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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