Variant report

Variant	rs12323273
Chromosome Location	chr13:94410521-94410522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94403218..94405199-chr13:94408583..94411196,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2150126	1.00[AMR][1000 genomes]
rs28460048	1.00[AMR][1000 genomes]
rs73541525	1.00[AMR][1000 genomes]
rs9584156	1.00[AMR][1000 genomes]
rs9584158	1.00[AMR][1000 genomes]
rs9584159	1.00[AMR][1000 genomes]
rs9584160	1.00[AMR][1000 genomes]
rs9584162	1.00[AMR][1000 genomes]
rs9584168	1.00[AMR][1000 genomes]
rs9589828	1.00[AMR][1000 genomes]
rs9589829	1.00[AMR][1000 genomes]
rs9589830	1.00[AMR][1000 genomes]
rs9589831	1.00[AMR][1000 genomes]
rs9589835	1.00[AMR][1000 genomes]
rs9589838	1.00[AMR][1000 genomes]
rs9589840	1.00[AMR][1000 genomes]
rs9589843	1.00[AMR][1000 genomes]
rs9589844	1.00[AMR][1000 genomes]
rs9589845	1.00[AMR][1000 genomes]
rs9589846	1.00[AMR][1000 genomes]
rs9589847	1.00[AMR][1000 genomes]
rs9589849	1.00[AMR][1000 genomes]
rs9589850	1.00[AMR][1000 genomes]
rs9589855	1.00[AMR][1000 genomes]
rs9589856	1.00[AMR][1000 genomes]
rs9589864	1.00[AMR][1000 genomes]
rs9589865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94400400-94411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:94403200-94412400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:94403400-94411000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:94403600-94411000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:94408200-94410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:94409000-94410600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:94409600-94411000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr13:94409800-94411400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:94410000-94411400	Enhancers	HepG2	liver
10	chr13:94410000-94411600	Enhancers	HUVEC	blood vessel
11	chr13:94410200-94410800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:94410400-94410600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:94410400-94411200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:94410400-94411200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:94410400-94411400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:94410400-94411400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr13:94410400-94411600	Enhancers	NH-A	brain

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