Variant report

Variant	rs9589840
Chromosome Location	chr13:94453765-94453766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12323273	1.00[AMR][1000 genomes]
rs2150126	1.00[AMR][1000 genomes]
rs28460048	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584156	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9584158	1.00[AMR][1000 genomes]
rs9584159	1.00[AMR][1000 genomes]
rs9584160	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584162	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584168	1.00[AMR][1000 genomes]
rs9589828	1.00[AMR][1000 genomes]
rs9589829	1.00[AMR][1000 genomes]
rs9589830	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589831	1.00[AMR][1000 genomes]
rs9589835	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9589838	1.00[AMR][1000 genomes]
rs9589843	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589844	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589845	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589846	1.00[AMR][1000 genomes]
rs9589847	1.00[AMR][1000 genomes]
rs9589849	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589850	1.00[AMR][1000 genomes]
rs9589855	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9589856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589864	1.00[AMR][1000 genomes]
rs9589865	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1130	chr13:94410849-94455628	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94448400-94456200	Weak transcription	Right Atrium	heart
2	chr13:94450200-94464200	Weak transcription	HSMM	muscle
3	chr13:94452200-94462000	Weak transcription	Ovary	ovary
4	chr13:94453200-94453800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:94453200-94453800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:94453400-94453800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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