Variant report

Variant	rs28460048
Chromosome Location	chr13:94504635-94504636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12323273	1.00[AMR][1000 genomes]
rs2150126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584156	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584158	1.00[AMR][1000 genomes]
rs9584159	1.00[AMR][1000 genomes]
rs9584160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584168	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589828	1.00[AMR][1000 genomes]
rs9589829	1.00[AMR][1000 genomes]
rs9589830	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589831	1.00[AMR][1000 genomes]
rs9589835	1.00[AMR][1000 genomes]
rs9589838	1.00[AMR][1000 genomes]
rs9589840	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589846	1.00[AMR][1000 genomes]
rs9589847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589850	1.00[AMR][1000 genomes]
rs9589855	1.00[AMR][1000 genomes]
rs9589856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589864	1.00[AMR][1000 genomes]
rs9589865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430598	chr13:94490519-94546599	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94500200-94509400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:94503600-94506200	Weak transcription	Brain Germinal Matrix	brain

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