Variant report
| Variant | rs12325489 |
|---|---|
| Chromosome Location | chr16:52307076-52307077 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:8)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CHD9-5 | chr16:52307024-52307131 | XLOC_011724 |
| 2 | lnc-CHD9-5 | chr16:52306977-52307131 | XLOC_011724 |
| 3 | lnc-CHD9-5 | chr16:52307024-52307131 | XLOC_011724 |
| 4 | lnc-CHD9-5 | chr16:52307024-52307131 | XLOC_011724 |
| 5 | lnc-CHD9-5 | chr16:52306977-52307131 | XLOC_011724 |
| 6 | lnc-CHD9-5 | chr16:52307024-52307131 | NONHSAT142523 |
| 7 | lnc-CHD9-5 | chr16:52305431-52307131 | NONHSAT142514 |
| 8 | lnc-CHD9-5 | chr16:52305528-52307131 | XLOC_011724 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10521261 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1080489 | 0.94[CHB][hapmap] |
| rs1080490 | 0.94[CHB][hapmap] |
| rs12599310 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12930272 | 0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs12930844 | 0.84[CEU][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1362376 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34214423 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34296884 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3826196 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs67253370 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs67505663 | 0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs67753568 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72794118 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492248 | chr16:51681902-52456082 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | esv34024 | chr16:51878565-52316530 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv1066719 | chr16:52294981-53141905 | Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 4 | nsv827651 | chr16:52304029-52373509 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
