Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10521261	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1080489	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1080490	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11076444	0.81[ASN][1000 genomes]
rs12325489	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12599310	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12930272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12930844	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362376	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420208	0.82[ASN][1000 genomes]
rs16950964	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34214423	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34296884	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34764426	0.81[ASN][1000 genomes]
rs35338484	0.82[ASN][1000 genomes]
rs3826196	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3859116	0.81[ASN][1000 genomes]
rs62041398	0.81[ASN][1000 genomes]
rs67253370	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67505663	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67753568	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52280400-52301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:52284200-52287600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr16:52285000-52287600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:52285400-52287600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr16:52285800-52288200	Weak transcription	NH-A	brain
6	chr16:52285800-52289800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr16:52286800-52298400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:52286800-52299200	Weak transcription	Fetal Brain Male	brain
9	chr16:52287000-52288000	Weak transcription	NHEK	skin
10	chr16:52287000-52288200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:52287000-52288400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:52287200-52289600	Weak transcription	Stomach Mucosa	stomach
13	chr16:52287400-52295200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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