Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10521261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1080489	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080490	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11076444	0.80[ASN][1000 genomes]
rs12325489	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12599310	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12930272	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12930844	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1362376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1420208	0.81[ASN][1000 genomes]
rs16950964	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34214423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34296884	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34764426	0.80[ASN][1000 genomes]
rs35338484	0.81[ASN][1000 genomes]
rs3826196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3859116	0.80[ASN][1000 genomes]
rs62041398	0.80[ASN][1000 genomes]
rs67253370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67753568	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72794118	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1066719	chr16:52294981-53141905	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52280400-52301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:52286800-52298400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:52286800-52299200	Weak transcription	Fetal Brain Male	brain
4	chr16:52291800-52299200	Weak transcription	Fetal Kidney	kidney
5	chr16:52295200-52296400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr16:52295400-52296000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr16:52295400-52298000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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