Variant report

Variant	rs67753568
Chromosome Location	chr16:52285658-52285659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10521261	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1080489	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1080490	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11076444	0.81[ASN][1000 genomes]
rs12325489	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12599310	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12930272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12930844	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362376	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1420208	0.82[ASN][1000 genomes]
rs16950964	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34214423	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34296884	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34764426	0.81[ASN][1000 genomes]
rs35338484	0.82[ASN][1000 genomes]
rs3826196	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3859116	0.81[ASN][1000 genomes]
rs62041398	0.81[ASN][1000 genomes]
rs67253370	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67505663	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72794118	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52280400-52301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:52284200-52286800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr16:52284200-52287600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr16:52284800-52287400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr16:52285000-52286400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr16:52285000-52287400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr16:52285000-52287400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr16:52285000-52287400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:52285000-52287600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr16:52285200-52285800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr16:52285200-52285800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr16:52285200-52286800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:52285200-52287000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr16:52285200-52287000	Enhancers	NHEK	skin
15	chr16:52285400-52285800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr16:52285400-52285800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr16:52285400-52285800	Enhancers	NH-A	brain
18	chr16:52285400-52286000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr16:52285400-52286200	Enhancers	Brain Germinal Matrix	brain
20	chr16:52285400-52286600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:52285400-52286800	Enhancers	Fetal Brain Male	brain
22	chr16:52285400-52287600	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links