Variant report

Variant	rs1233259
Chromosome Location	chr2:190708943-190708944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190694673..190697021-chr2:190708610..190710917,2	MCF-7	breast:
2	chr2:190707467..190709544-chr2:190709954..190711600,2	K562	blood:
3	chr2:190615507..190617110-chr2:190708783..190711521,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1145235	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225082	1.00[AMR][1000 genomes]
rs1225095	1.00[AMR][1000 genomes]
rs1233268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233269	1.00[AMR][1000 genomes]
rs1233301	1.00[AMR][1000 genomes]
rs1435138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246686	1.00[AMR][1000 genomes]
rs288826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875617	chr2:190701869-190724141	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190649800-190713400	Weak transcription	Gastric	stomach
2	chr2:190650400-190711400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:190656800-190721000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:190658200-190743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:190659800-190743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:190661400-190717800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:190662800-190719000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:190663000-190712800	Weak transcription	Aorta	Aorta
9	chr2:190663200-190712400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr2:190664800-190741800	Weak transcription	Brain Angular Gyrus	brain
11	chr2:190669400-190743800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:190669600-190709600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:190669600-190713200	Weak transcription	Ovary	ovary
14	chr2:190669800-190709000	Weak transcription	Placenta	Placenta
15	chr2:190670800-190712800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:190671000-190719600	Weak transcription	NH-A	brain
17	chr2:190676200-190712400	Weak transcription	K562	blood
18	chr2:190677000-190709400	Weak transcription	Fetal Intestine Small	intestine
19	chr2:190681000-190743000	Weak transcription	Brain Germinal Matrix	brain
20	chr2:190683800-190709800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:190684000-190712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:190684000-190712800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr2:190684000-190743600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr2:190684600-190709800	Weak transcription	HMEC	breast
25	chr2:190684600-190712600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:190684600-190712600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr2:190685000-190712600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:190685000-190736400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:190685400-190712800	Weak transcription	Adipose Nuclei	Adipose
30	chr2:190685400-190739400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr2:190685400-190741800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:190685600-190709600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:190685600-190712800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:190685800-190709600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:190686000-190711400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr2:190687000-190712800	Weak transcription	Thymus	Thymus
37	chr2:190687000-190724400	Weak transcription	Esophagus	oesophagus
38	chr2:190687000-190738400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:190687000-190738400	Weak transcription	Lung	lung
40	chr2:190687200-190710200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:190687200-190710400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:190691000-190709600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:190691000-190709800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:190691000-190712800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:190691000-190744200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr2:190691400-190719000	Weak transcription	HUVEC	blood vessel
47	chr2:190692600-190709800	Weak transcription	Primary B cells from cord blood	blood
48	chr2:190694000-190714800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr2:190695600-190709600	Weak transcription	Fetal Muscle Leg	muscle
50	chr2:190695800-190709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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