Variant report

Variant	rs288827
Chromosome Location	chr2:190792688-190792689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1145235	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225082	1.00[AMR][1000 genomes]
rs1225095	1.00[AMR][1000 genomes]
rs1233259	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233269	1.00[AMR][1000 genomes]
rs1233301	1.00[AMR][1000 genomes]
rs1435138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2246686	1.00[AMR][1000 genomes]
rs288826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5742968	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875618	chr2:190789387-190883360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190792400-190792800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:190792400-190792800	Enhancers	NHDF-Ad	bronchial
3	chr2:190792400-190793000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:190792400-190793000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:190792600-190792800	Enhancers	HSMM	muscle
6	chr2:190792600-190793000	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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