Variant report

Variant	rs12333098
Chromosome Location	chr6:72052853-72052854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72039083..72041745-chr6:72052272..72053919,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12333134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881118	1.00[AMR][1000 genomes]
rs16881146	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567933	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282522	1.00[AMR][1000 genomes]
rs61349906	1.00[AMR][1000 genomes]
rs61358896	1.00[AMR][1000 genomes]
rs73503193	1.00[AMR][1000 genomes]
rs73505183	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505184	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515587	1.00[AMR][1000 genomes]
rs73517620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446371	1.00[AMR][1000 genomes]
rs9446376	1.00[AMR][1000 genomes]
rs9446382	1.00[AMR][1000 genomes]
rs9455419	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455428	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455429	1.00[AMR][1000 genomes]
rs9455431	1.00[AMR][1000 genomes]
rs9455433	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455446	1.00[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
5	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
7	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
8	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
9	chr6:72040600-72056600	Weak transcription	Lung	lung
10	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:72044200-72059400	Weak transcription	NH-A	brain
12	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:72044600-72053200	Weak transcription	HSMM	muscle
14	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
16	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:72045000-72059000	Weak transcription	Osteobl	bone
18	chr6:72045600-72053200	Weak transcription	Fetal Kidney	kidney
19	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:72046800-72053200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:72048000-72057200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:72048400-72054200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:72048600-72053600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:72052000-72053000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72052000-72053000	Enhancers	Adipose Nuclei	Adipose
26	chr6:72052000-72053200	Enhancers	HSMMtube	muscle
27	chr6:72052400-72055800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:72052600-72054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:72052800-72053000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:72052800-72055400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:72052800-72059000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:72052800-72059600	Weak transcription	NHDF-Ad	bronchial
33	chr6:72052800-72059800	Weak transcription	NHLF	lung

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