Variant report

Variant	rs9446382
Chromosome Location	chr6:72086329-72086330
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72085900-72087338	NONHSAT113497

rs_ID	r²[population]
rs10080965	0.86[AFR][1000 genomes]
rs12333098	1.00[AMR][1000 genomes]
rs12333134	1.00[AMR][1000 genomes]
rs12333225	1.00[AMR][1000 genomes]
rs16881118	1.00[AMR][1000 genomes]
rs16881146	1.00[AMR][1000 genomes]
rs16881197	0.91[AFR][1000 genomes]
rs57567933	1.00[AMR][1000 genomes]
rs59106567	0.82[AFR][1000 genomes]
rs60282522	1.00[AMR][1000 genomes]
rs61349906	1.00[AMR][1000 genomes]
rs61358896	1.00[AMR][1000 genomes]
rs73503193	1.00[AMR][1000 genomes]
rs73505183	1.00[AMR][1000 genomes]
rs73505184	1.00[AMR][1000 genomes]
rs73515587	1.00[AMR][1000 genomes]
rs73517620	1.00[AMR][1000 genomes]
rs73517631	1.00[AMR][1000 genomes]
rs73520009	1.00[AMR][1000 genomes]
rs73520627	0.85[AFR][1000 genomes]
rs769352	1.00[ASW][hapmap];0.87[LWK][hapmap];0.83[YRI][hapmap]
rs9446364	1.00[AMR][1000 genomes]
rs9446369	1.00[AMR][1000 genomes]
rs9446371	1.00[AMR][1000 genomes]
rs9446376	1.00[AMR][1000 genomes]
rs9446383	0.87[ASW][hapmap];0.84[LWK][hapmap];0.83[AFR][1000 genomes]
rs9446384	0.83[AFR][1000 genomes]
rs9446388	0.85[AFR][1000 genomes]
rs9446390	0.83[AFR][1000 genomes]
rs9455419	1.00[AMR][1000 genomes]
rs9455420	1.00[AMR][1000 genomes]
rs9455428	1.00[AMR][1000 genomes]
rs9455429	1.00[AMR][1000 genomes]
rs9455431	1.00[AMR][1000 genomes]
rs9455433	1.00[AMR][1000 genomes]
rs9455438	1.00[AMR][1000 genomes]
rs9455446	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455453	0.93[AFR][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72075400-72087200	Weak transcription	Fetal Heart	heart
3	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
5	chr6:72076600-72087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:72076600-72090200	Weak transcription	Ovary	ovary
7	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:72077800-72087800	Weak transcription	Right Ventricle	heart
10	chr6:72077800-72088000	Weak transcription	Left Ventricle	heart
11	chr6:72077800-72093000	Weak transcription	Lung	lung
12	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
13	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
14	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:72081200-72087800	Weak transcription	HSMMtube	muscle
18	chr6:72081400-72091400	Strong transcription	Hela-S3	cervix
19	chr6:72082000-72087000	Weak transcription	Fetal Kidney	kidney
20	chr6:72082200-72090800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:72082400-72088000	Weak transcription	Liver	Liver
22	chr6:72082600-72093200	Weak transcription	Osteobl	bone
23	chr6:72083400-72087200	Enhancers	HMEC	breast
24	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
25	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
26	chr6:72084200-72087200	Weak transcription	NHDF-Ad	bronchial
27	chr6:72084200-72090800	Weak transcription	NHLF	lung
28	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:72084400-72086600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:72084400-72086800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:72084400-72087600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:72084400-72087600	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:72084400-72088000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:72084400-72090400	Weak transcription	Adipose Nuclei	Adipose
36	chr6:72084400-72090400	Weak transcription	NH-A	brain
37	chr6:72084400-72092600	Weak transcription	Fetal Lung	lung
38	chr6:72084400-72093400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
41	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:72084600-72090800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:72084800-72087200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:72085200-72086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:72085200-72088400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:72085400-72086800	Enhancers	A549	lung
47	chr6:72085400-72091000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:72085600-72086800	Weak transcription	HUVEC	blood vessel
49	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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