Variant report

Variant	rs9455453
Chromosome Location	chr6:72093953-72093954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:72093815..72094632-chr6:72219500..72220140,3	MCF-7	breast:
2	chr6:72093333..72094331-chr6:72192117..72193060,3	MCF-7	breast:
3	chr6:72093251..72094416-chr6:72153669..72154687,7	MCF-7	breast:
4	chr6:72093320..72094313-chr6:72192220..72193121,6	MCF-7	breast:
5	chr6:72093472..72094215-chr6:72153713..72154499,3	MCF-7	breast:
6	chr6:72093309..72094922-chr6:72219520..72220483,12	MCF-7	breast:

rs_ID	r²[population]
rs10080965	0.93[AFR][1000 genomes]
rs16881197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106567	0.88[AFR][1000 genomes]
rs73520627	0.91[AFR][1000 genomes]
rs769352	0.85[AFR][1000 genomes]
rs9446382	0.93[AFR][1000 genomes]
rs9446387	0.81[AFR][1000 genomes]
rs9446388	0.91[AFR][1000 genomes]
rs9446390	0.90[AFR][1000 genomes]
rs9455446	0.87[AFR][1000 genomes]
rs9455466	0.82[AFR][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
3	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
5	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
8	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
10	chr6:72084200-72097000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:72084400-72094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:72084400-72094800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:72084400-72099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:72085600-72096800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:72085800-72105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:72087400-72098200	Weak transcription	Colonic Mucosa	Colon
18	chr6:72088400-72097800	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:72088600-72097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:72088800-72095000	Weak transcription	HSMMtube	muscle
21	chr6:72088800-72101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:72090400-72101000	Weak transcription	Gastric	stomach
23	chr6:72091000-72094600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:72091000-72095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:72091200-72094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:72091200-72094600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:72091200-72095600	Weak transcription	NHEK	skin
28	chr6:72091400-72095200	Weak transcription	NH-A	brain
29	chr6:72091800-72097200	Weak transcription	Fetal Stomach	stomach
30	chr6:72093200-72094200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:72093200-72094600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:72093400-72094000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:72093400-72094000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:72093400-72094000	Enhancers	Brain Anterior Caudate	brain
35	chr6:72093400-72094000	Enhancers	Brain Hippocampus Middle	brain
36	chr6:72093400-72094200	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:72093400-72094200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:72093400-72094200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:72093400-72094200	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:72093400-72101200	Genic enhancers	Hela-S3	cervix
41	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
42	chr6:72093600-72094000	Weak transcription	Fetal Lung	lung
43	chr6:72093600-72094000	Weak transcription	HUVEC	blood vessel
44	chr6:72093600-72094200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:72093600-72094200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:72093600-72094200	Enhancers	Colon Smooth Muscle	Colon
47	chr6:72093600-72094800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:72093600-72094800	Weak transcription	Fetal Kidney	kidney
49	chr6:72093600-72094800	Enhancers	A549	lung
50	chr6:72093600-72094800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links