Variant report

Variant	rs9446388
Chromosome Location	chr6:72106840-72106841
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10080965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10155717	1.00[AMR][1000 genomes]
rs16881197	0.90[AFR][1000 genomes]
rs59106567	0.93[AFR][1000 genomes]
rs73520627	1.00[AFR][1000 genomes]
rs769352	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9446382	0.85[AFR][1000 genomes]
rs9446383	0.87[ASW][hapmap];0.81[LWK][hapmap]
rs9446390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455453	0.91[AFR][1000 genomes]
rs9455466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
2	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:72103000-72107200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
8	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
9	chr6:72104200-72107200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
11	chr6:72104800-72107000	Genic enhancers	Psoas Muscle	Psoas
12	chr6:72105000-72110400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:72105000-72113000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:72105200-72107200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:72105400-72107000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:72105400-72107200	Genic enhancers	HMEC	breast
17	chr6:72105400-72107600	Enhancers	Brain Angular Gyrus	brain
18	chr6:72105400-72107800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:72105600-72117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:72105800-72107000	Genic enhancers	HSMM	muscle
21	chr6:72106000-72107000	Genic enhancers	NHEK	skin
22	chr6:72106000-72107400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:72106000-72107800	Genic enhancers	A549	lung
24	chr6:72106000-72109200	Weak transcription	NHLF	lung
25	chr6:72106000-72119600	Weak transcription	Lung	lung
26	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:72106200-72108000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:72106200-72109400	Genic enhancers	Fetal Kidney	kidney
29	chr6:72106200-72113800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:72106400-72107600	Strong transcription	Adipose Nuclei	Adipose
31	chr6:72106400-72107800	Strong transcription	Placenta	Placenta
32	chr6:72106400-72108000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
35	chr6:72106600-72107000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:72106600-72107400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:72106600-72107800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:72106600-72107800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:72106600-72107800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr6:72106600-72107800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:72106600-72108000	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr6:72106600-72108000	Strong transcription	Fetal Lung	lung
43	chr6:72106600-72110400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:72106600-72113200	Weak transcription	Brain Anterior Caudate	brain
45	chr6:72106600-72117200	Weak transcription	Gastric	stomach
46	chr6:72106600-72122000	Weak transcription	Brain Substantia Nigra	brain
47	chr6:72106800-72107000	Weak transcription	HSMMtube	muscle
48	chr6:72106800-72107400	Strong transcription	Liver	Liver
49	chr6:72106800-72107400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:72106800-72107600	Strong transcription	Skeletal Muscle Female	skeletal muscle

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