Variant report

Variant	rs10080965
Chromosome Location	chr6:72105609-72105610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10155717	1.00[AMR][1000 genomes]
rs16881197	0.91[AFR][1000 genomes]
rs59106567	0.95[AFR][1000 genomes]
rs73510427	0.81[AFR][1000 genomes]
rs73520627	0.98[AFR][1000 genomes]
rs769352	1.00[ASW][hapmap];0.91[LWK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs9446382	0.86[AFR][1000 genomes]
rs9446383	0.87[ASW][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap]
rs9446388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455453	0.93[AFR][1000 genomes]
rs9455466	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72084200-72106600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:72093400-72106400	Weak transcription	Spleen	Spleen
3	chr6:72096800-72106000	Enhancers	Adipose Nuclei	Adipose
4	chr6:72098400-72117200	Weak transcription	Pancreas	Pancrea
5	chr6:72099200-72106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:72099600-72114400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:72100200-72106400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:72100200-72113200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:72101000-72106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:72101000-72113200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:72101400-72106400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:72101600-72111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:72101800-72105800	Weak transcription	Gastric	stomach
14	chr6:72101800-72105800	Weak transcription	Lung	lung
15	chr6:72101800-72106400	Enhancers	NHDF-Ad	bronchial
16	chr6:72101800-72106600	Enhancers	Osteobl	bone
17	chr6:72102600-72106600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:72102600-72106600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:72102600-72106600	Enhancers	NH-A	brain
20	chr6:72102600-72106800	Enhancers	Colon Smooth Muscle	Colon
21	chr6:72103000-72106400	Enhancers	HSMMtube	muscle
22	chr6:72103000-72107200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:72103200-72106000	Enhancers	NHEK	skin
24	chr6:72103200-72106400	Enhancers	HUVEC	blood vessel
25	chr6:72103200-72106800	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:72103400-72106400	Enhancers	Fetal Lung	lung
27	chr6:72103400-72106600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:72103400-72114400	Weak transcription	Small Intestine	intestine
29	chr6:72103600-72106600	Enhancers	Brain Anterior Caudate	brain
30	chr6:72103800-72106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:72104000-72106000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:72104000-72106000	Enhancers	NHLF	lung
33	chr6:72104000-72106200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:72104000-72106400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:72104000-72106600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:72104000-72122000	Weak transcription	Fetal Stomach	stomach
37	chr6:72104200-72107200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:72104200-72111800	Weak transcription	Fetal Heart	heart
39	chr6:72104600-72106200	Weak transcription	Liver	Liver
40	chr6:72104800-72106200	Enhancers	Fetal Kidney	kidney
41	chr6:72104800-72106200	Enhancers	Left Ventricle	heart
42	chr6:72104800-72106400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:72104800-72106400	Enhancers	Ovary	ovary
44	chr6:72104800-72106600	Enhancers	Brain Substantia Nigra	brain
45	chr6:72104800-72106600	Enhancers	Right Atrium	heart
46	chr6:72104800-72106800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:72104800-72106800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:72104800-72107000	Genic enhancers	Psoas Muscle	Psoas
49	chr6:72105000-72105800	Enhancers	HSMM	muscle
50	chr6:72105000-72106000	Weak transcription	Fetal Brain Male	brain

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