Variant report

Variant	rs59106567
Chromosome Location	chr6:72122162-72122163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72120538..72122700-chr6:72126675..72130838,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72118646-72122251	NONHSAT113497

Variant related genes	Relation type
ENSG00000233237	Chromatin interaction
ENSG00000269966	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10080965	0.95[AFR][1000 genomes]
rs16881197	0.86[AFR][1000 genomes]
rs73520627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446382	0.82[AFR][1000 genomes]
rs9446388	0.93[AFR][1000 genomes]
rs9446390	0.88[AFR][1000 genomes]
rs9455453	0.88[AFR][1000 genomes]
rs9455466	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72106000-72124800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:72106400-72126800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:72106400-72128600	Weak transcription	Fetal Brain Male	brain
4	chr6:72106800-72128600	Weak transcription	Fetal Brain Female	brain
5	chr6:72106800-72128800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:72107800-72125000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:72114000-72124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:72114200-72122200	Weak transcription	Right Atrium	heart
9	chr6:72114200-72125000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:72115400-72125200	Weak transcription	Fetal Intestine Large	intestine
11	chr6:72115600-72123000	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr6:72116200-72128600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:72117200-72122400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:72117400-72122200	Weak transcription	Esophagus	oesophagus
15	chr6:72117600-72122200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:72117600-72122200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:72117600-72128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:72118200-72122400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:72118200-72122800	Genic enhancers	HMEC	breast
20	chr6:72118200-72127800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:72118400-72123200	Genic enhancers	HUVEC	blood vessel
22	chr6:72118600-72122600	Genic enhancers	NH-A	brain
23	chr6:72118600-72122600	Genic enhancers	NHDF-Ad	bronchial
24	chr6:72118600-72122800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:72118600-72122800	Enhancers	Brain Anterior Caudate	brain
26	chr6:72118800-72122400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:72119000-72125000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:72119400-72122200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:72119400-72122600	Enhancers	Psoas Muscle	Psoas
30	chr6:72119800-72125200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:72120000-72122200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:72120000-72122600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:72120000-72129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:72120200-72126600	Weak transcription	Fetal Intestine Small	intestine
35	chr6:72120200-72126600	Weak transcription	Lung	lung
36	chr6:72120400-72122600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:72120400-72123400	ZNF genes & repeats	NHEK	skin
38	chr6:72120800-72122200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:72120800-72122800	Enhancers	NHLF	lung
40	chr6:72121000-72122200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:72121000-72122200	Active TSS	Stomach Smooth Muscle	stomach
42	chr6:72121000-72124200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:72121200-72122600	Enhancers	Aorta	Aorta
44	chr6:72121400-72122400	Enhancers	Liver	Liver
45	chr6:72121400-72124800	Enhancers	Osteobl	bone
46	chr6:72121600-72122200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:72121600-72122200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:72121600-72122400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:72121600-72123000	Enhancers	Colon Smooth Muscle	Colon
50	chr6:72121600-72123000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links