Variant report

Variant	rs9455446
Chromosome Location	chr6:72084379-72084380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-3	chr6:72082956-72084734	NONHSAT113496

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12333098	1.00[AMR][1000 genomes]
rs12333134	1.00[AMR][1000 genomes]
rs12333225	1.00[AMR][1000 genomes]
rs16881118	1.00[AMR][1000 genomes]
rs16881146	1.00[AMR][1000 genomes]
rs16881197	0.85[AFR][1000 genomes]
rs57567933	1.00[AMR][1000 genomes]
rs60282522	1.00[AMR][1000 genomes]
rs61349906	1.00[AMR][1000 genomes]
rs61358896	1.00[AMR][1000 genomes]
rs73503193	1.00[AMR][1000 genomes]
rs73505183	1.00[AMR][1000 genomes]
rs73505184	1.00[AMR][1000 genomes]
rs73515587	1.00[AMR][1000 genomes]
rs73517620	1.00[AMR][1000 genomes]
rs73517631	1.00[AMR][1000 genomes]
rs73520009	1.00[AMR][1000 genomes]
rs9446364	1.00[AMR][1000 genomes]
rs9446369	1.00[AMR][1000 genomes]
rs9446371	1.00[AMR][1000 genomes]
rs9446376	1.00[AMR][1000 genomes]
rs9446382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455419	1.00[AMR][1000 genomes]
rs9455420	1.00[AMR][1000 genomes]
rs9455428	1.00[AMR][1000 genomes]
rs9455429	1.00[AMR][1000 genomes]
rs9455431	1.00[AMR][1000 genomes]
rs9455433	1.00[AMR][1000 genomes]
rs9455438	1.00[AMR][1000 genomes]
rs9455453	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431356	chr6:72083881-72085879	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72071400-72085200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:72075400-72087200	Weak transcription	Fetal Heart	heart
4	chr6:72076000-72093400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:72076200-72103200	Weak transcription	Aorta	Aorta
6	chr6:72076600-72087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:72076600-72090200	Weak transcription	Ovary	ovary
8	chr6:72077600-72085400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:72077600-72093400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:72077600-72094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:72077800-72087800	Weak transcription	Right Ventricle	heart
12	chr6:72077800-72088000	Weak transcription	Left Ventricle	heart
13	chr6:72077800-72093000	Weak transcription	Lung	lung
14	chr6:72077800-72093200	Weak transcription	Pancreas	Pancrea
15	chr6:72077800-72097000	Weak transcription	Psoas Muscle	Psoas
16	chr6:72077800-72097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:72078200-72095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:72079800-72098800	Weak transcription	Brain Substantia Nigra	brain
19	chr6:72080400-72084400	Strong transcription	HSMM	muscle
20	chr6:72081200-72084400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr6:72081200-72087800	Weak transcription	HSMMtube	muscle
22	chr6:72081400-72091400	Strong transcription	Hela-S3	cervix
23	chr6:72081600-72084400	Weak transcription	Fetal Brain Male	brain
24	chr6:72082000-72087000	Weak transcription	Fetal Kidney	kidney
25	chr6:72082200-72090800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:72082400-72088000	Weak transcription	Liver	Liver
27	chr6:72082600-72093200	Weak transcription	Osteobl	bone
28	chr6:72082800-72085200	Weak transcription	HUVEC	blood vessel
29	chr6:72082800-72086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:72083400-72084400	Enhancers	Adipose Nuclei	Adipose
31	chr6:72083400-72084600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:72083400-72087200	Enhancers	HMEC	breast
33	chr6:72083400-72094600	Weak transcription	Fetal Intestine Large	intestine
34	chr6:72083600-72084400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:72083600-72084400	ZNF genes & repeats	A549	lung
36	chr6:72083600-72084600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:72083800-72084400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:72083800-72084400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:72083800-72084400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:72083800-72084400	Strong transcription	Fetal Lung	lung
41	chr6:72083800-72084400	Strong transcription	NH-A	brain
42	chr6:72083800-72084400	ZNF genes & repeats	NHEK	skin
43	chr6:72083800-72084600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:72083800-72097800	Weak transcription	Placenta	Placenta
45	chr6:72084000-72084400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr6:72084000-72084400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr6:72084000-72084400	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr6:72084000-72084400	ZNF genes & repeats	Fetal Muscle Leg	muscle
49	chr6:72084000-72084400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
50	chr6:72084200-72084400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links