Variant report

Variant	rs9455428
Chromosome Location	chr6:72001387-72001388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12333098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333225	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16881118	1.00[AMR][1000 genomes]
rs16881146	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567933	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282522	1.00[AMR][1000 genomes]
rs61349906	1.00[AMR][1000 genomes]
rs61358896	1.00[AMR][1000 genomes]
rs73503193	1.00[AMR][1000 genomes]
rs73505183	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515587	1.00[AMR][1000 genomes]
rs73517620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520009	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446371	1.00[AMR][1000 genomes]
rs9446376	1.00[AMR][1000 genomes]
rs9446382	1.00[AMR][1000 genomes]
rs9455419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455429	1.00[AMR][1000 genomes]
rs9455431	1.00[AMR][1000 genomes]
rs9455433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795873	chr6:71997278-72005794	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1841286	chr6:71997278-72006512	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1802752	chr6:71998480-72005794	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71997000-72002000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:71997600-72001400	Active TSS	Brain Substantia Nigra	brain
3	chr6:71997800-72002000	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:71997800-72003000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr6:71998000-72002200	Active TSS	Brain Angular Gyrus	brain
6	chr6:71998200-72002200	Active TSS	GM12878-XiMat	blood
7	chr6:71999000-72002000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:71999200-72003600	Weak transcription	Spleen	Spleen
9	chr6:71999200-72003800	Weak transcription	Gastric	stomach
10	chr6:71999200-72003800	Weak transcription	Ovary	ovary
11	chr6:71999400-72001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:71999400-72002000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr6:71999600-72002000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:71999600-72002000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:71999600-72002000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:71999600-72002600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:71999600-72003800	Weak transcription	Stomach Mucosa	stomach
18	chr6:71999600-72012600	Weak transcription	Colonic Mucosa	Colon
19	chr6:71999800-72001400	Enhancers	Fetal Intestine Small	intestine
20	chr6:71999800-72001800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:71999800-72002000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:71999800-72002000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr6:71999800-72002000	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:71999800-72002000	Active TSS	Right Atrium	heart
25	chr6:71999800-72002200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:71999800-72002200	Enhancers	Fetal Brain Male	brain
27	chr6:71999800-72003400	Weak transcription	Liver	Liver
28	chr6:71999800-72003600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:71999800-72003600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:71999800-72003600	Weak transcription	Lung	lung
31	chr6:71999800-72003800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:71999800-72003800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:71999800-72003800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:71999800-72003800	Weak transcription	Esophagus	oesophagus
35	chr6:71999800-72003800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:71999800-72003800	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:71999800-72003800	Weak transcription	Pancreas	Pancrea
38	chr6:71999800-72008000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:71999800-72008200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:71999800-72008400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:71999800-72010400	Weak transcription	Primary T cells from cord blood	blood
42	chr6:71999800-72011200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:71999800-72015200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
45	chr6:72000000-72001400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:72000000-72001400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:72000000-72001400	Enhancers	NHEK	skin
48	chr6:72000000-72001600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr6:72000000-72001800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:72000000-72001800	Enhancers	Fetal Brain Female	brain

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