Variant report

Variant	rs12336889
Chromosome Location	chr9:110746215-110746216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10120991	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124421	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10124568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979150	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002014	1.00[ASN][1000 genomes]
rs12338094	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338152	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346973	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352557	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625170	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28697269	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653695	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969748	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110741000-110747200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110744200-110747200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:110744600-110746400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:110744600-110746400	Enhancers	NHEK	skin
5	chr9:110745000-110746400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110745000-110746400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:110746000-110751200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:110746200-110746400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:110746200-110747000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr9:110746200-110750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:110746200-110751200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:110746200-110751200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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