Variant report

Variant	rs28697269
Chromosome Location	chr9:110746007-110746008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10120991	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124421	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10124568	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979150	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002014	1.00[ASN][1000 genomes]
rs12336889	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338094	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338152	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346973	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352557	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625170	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	1.00[EUR][1000 genomes]
rs73653695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969748	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110741000-110747200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:110741600-110746200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:110744200-110747200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:110744600-110746200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:110744600-110746200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110744600-110746400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:110744600-110746400	Enhancers	NHEK	skin
8	chr9:110745000-110746200	Enhancers	NHDF-Ad	bronchial
9	chr9:110745000-110746400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:110745000-110746400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:110745200-110746200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:110745400-110746200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:110745400-110746200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:110745600-110746200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:110745600-110746200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:110746000-110746200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:110746000-110751200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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