Variant report

Variant	rs28625170
Chromosome Location	chr9:110735441-110735442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10120991	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124421	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10124568	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979150	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002014	1.00[ASN][1000 genomes]
rs12336889	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346973	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28697269	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065550	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969748	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110726800-110738400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:110727000-110738200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:110730200-110736200	Enhancers	Stomach Mucosa	stomach
4	chr9:110731000-110739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:110732200-110737000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:110732400-110736800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:110733400-110736000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:110733400-110738400	Weak transcription	Esophagus	oesophagus
9	chr9:110733400-110738800	Weak transcription	Small Intestine	intestine
10	chr9:110734000-110737800	Weak transcription	Fetal Intestine Large	intestine
11	chr9:110734200-110737400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:110734400-110737400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:110734400-110737800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:110734400-110739000	Weak transcription	Hela-S3	cervix
15	chr9:110734800-110738200	Weak transcription	Placenta	Placenta
16	chr9:110735000-110735600	Enhancers	Fetal Kidney	kidney
17	chr9:110735200-110739000	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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