Variant report

Variant	rs12341413
Chromosome Location	chr9:104132508-104132509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10989488	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920259	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920270	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920288	0.82[YRI][hapmap];0.93[AFR][1000 genomes]
rs60381099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73657935	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3431849	chr9:104129584-104132561	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117600-104138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
3	chr9:104128600-104135600	Genic enhancers	Liver	Liver
4	chr9:104128800-104133600	Enhancers	K562	blood
5	chr9:104129000-104132600	Enhancers	A549	lung
6	chr9:104129000-104138200	Weak transcription	HSMMtube	muscle
7	chr9:104130600-104132800	Weak transcription	Fetal Intestine Large	intestine
8	chr9:104132000-104134600	Weak transcription	HepG2	liver
9	chr9:104132000-104135000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:104132000-104135000	Weak transcription	HSMM	muscle
11	chr9:104132000-104135200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:104132000-104137800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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