Variant report

Variant	rs73657935
Chromosome Location	chr9:104138077-104138078
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10989488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920288	0.80[AFR][1000 genomes]
rs60381099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656634	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117600-104138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
3	chr9:104129000-104138200	Weak transcription	HSMMtube	muscle
4	chr9:104135400-104138200	Weak transcription	HSMM	muscle
5	chr9:104135400-104138800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:104135600-104138800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:104137600-104138400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:104137800-104138200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:104137800-104138400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:104137800-104138600	Genic enhancers	Liver	Liver
11	chr9:104137800-104139400	Enhancers	NH-A	brain
12	chr9:104137800-104139800	Enhancers	A549	lung
13	chr9:104138000-104138400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:104138000-104138600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:104138000-104139200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:104138000-104139200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links