Variant report

Variant	rs16920288
Chromosome Location	chr9:104153268-104153269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104153060..104154833-chr9:104173382..104175911,2	MCF-7	breast:
2	chr9:104139830..104141869-chr9:104151985..104154438,2	MCF-7	breast:
3	chr9:104148610..104154266-chr9:104158623..104161916,13	K562	blood:

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction
ENSG00000136897	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10114241	0.85[JPT][hapmap]
rs10123392	0.82[JPT][hapmap]
rs10989488	0.93[AFR][1000 genomes]
rs11788495	1.00[CHB][hapmap]
rs11793528	0.82[JPT][hapmap]
rs12336316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12341413	0.82[YRI][hapmap];0.93[AFR][1000 genomes]
rs12350797	0.82[JPT][hapmap]
rs1341761	0.85[JPT][hapmap]
rs1341762	0.82[JPT][hapmap]
rs16920259	0.80[AFR][1000 genomes]
rs16920270	0.80[AFR][1000 genomes]
rs4322060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45589031	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60381099	0.80[AFR][1000 genomes]
rs7048634	0.85[JPT][hapmap]
rs73657935	0.80[AFR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:104144600-104156600	Weak transcription	Aorta	Aorta
4	chr9:104144800-104159800	Weak transcription	NHEK	skin
5	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:104147600-104156600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:104147600-104160200	Weak transcription	Gastric	stomach
8	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
9	chr9:104148000-104157600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:104148200-104159800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:104148400-104153800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:104148400-104156600	Weak transcription	Psoas Muscle	Psoas
14	chr9:104148600-104153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:104149000-104160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:104149000-104160000	Weak transcription	Right Ventricle	heart
17	chr9:104149200-104153600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:104149200-104157600	Weak transcription	Fetal Lung	lung
19	chr9:104149200-104160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:104149400-104153600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:104149400-104153600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:104149400-104153600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr9:104149400-104153600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr9:104149400-104154200	Strong transcription	Dnd41	blood
25	chr9:104149400-104158400	Weak transcription	Fetal Heart	heart
26	chr9:104149600-104153400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:104149800-104153600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:104149800-104154000	Strong transcription	HSMM	muscle
29	chr9:104150200-104153400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:104150200-104153400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:104150200-104153400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr9:104150200-104153400	Strong transcription	Fetal Muscle Leg	muscle
33	chr9:104150200-104153400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr9:104150200-104153600	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:104150200-104153600	Strong transcription	Left Ventricle	heart
36	chr9:104150200-104153800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr9:104150200-104153800	Strong transcription	K562	blood
38	chr9:104150200-104154200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:104150200-104154400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:104150200-104158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:104150200-104160000	Weak transcription	Lung	lung
42	chr9:104150400-104153400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr9:104150400-104153400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:104150400-104153400	Strong transcription	Fetal Thymus	thymus
45	chr9:104150400-104153600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:104150400-104153600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:104150400-104153600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:104150400-104153800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:104150600-104153400	Strong transcription	GM12878-XiMat	blood
50	chr9:104150600-104153600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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