Variant report

Variant	rs60381099
Chromosome Location	chr9:104157332-104157333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:104155892-104158969	K562	blood:	n/a	n/a
2	FOXA1	chr9:104156920-104157413	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:104155062..104157564-chr9:104158610..104160919,4	K562	blood:
2	chr9:104142804..104145826-chr9:104154451..104158156,3	K562	blood:
3	chr9:104156777..104159647-chr9:104161503..104163892,2	K562	blood:
4	chr9:104087366..104090145-chr9:104156238..104158604,2	K562	blood:

Variant related genes	Relation type
ZNF189	TF binding region
ENSG00000136881	Chromatin interaction
ENSG00000136897	Chromatin interaction

rs_ID	r²[population]
rs10989488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920288	0.80[AFR][1000 genomes]
rs73656634	0.88[AFR][1000 genomes]
rs73657935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104144800-104159800	Weak transcription	NHEK	skin
3	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:104147600-104160200	Weak transcription	Gastric	stomach
5	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
6	chr9:104148000-104157600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:104148200-104159800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:104149000-104160000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:104149000-104160000	Weak transcription	Right Ventricle	heart
11	chr9:104149200-104157600	Weak transcription	Fetal Lung	lung
12	chr9:104149200-104160000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:104149400-104158400	Weak transcription	Fetal Heart	heart
14	chr9:104150200-104158000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:104150200-104160000	Weak transcription	Lung	lung
16	chr9:104150600-104159800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:104150800-104158400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:104150800-104159200	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:104150800-104159800	Weak transcription	Brain Angular Gyrus	brain
20	chr9:104151000-104159800	Weak transcription	Fetal Stomach	stomach
21	chr9:104151200-104159800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:104151200-104160000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:104151400-104160000	Weak transcription	Colonic Mucosa	Colon
24	chr9:104151600-104160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:104151800-104160200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:104152400-104159600	Weak transcription	HUVEC	blood vessel
27	chr9:104153000-104157800	Weak transcription	Hela-S3	cervix
28	chr9:104153000-104159400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:104153200-104157800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:104153200-104158200	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:104153200-104158400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:104153200-104158600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:104153200-104158600	Weak transcription	Brain Anterior Caudate	brain
34	chr9:104153200-104158800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:104153200-104159400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:104153200-104159400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:104153200-104160000	Weak transcription	Placenta	Placenta
38	chr9:104153200-104160000	Weak transcription	Ovary	ovary
39	chr9:104153200-104160200	Weak transcription	Small Intestine	intestine
40	chr9:104153400-104159200	Weak transcription	Thymus	Thymus
41	chr9:104153400-104159400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr9:104153400-104159400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:104153400-104159400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr9:104153400-104159400	Weak transcription	NHLF	lung
45	chr9:104153400-104159800	Weak transcription	Brain Substantia Nigra	brain
46	chr9:104153400-104159800	Weak transcription	NH-A	brain
47	chr9:104153400-104159800	Weak transcription	NHDF-Ad	bronchial
48	chr9:104153400-104159800	Weak transcription	Osteobl	bone
49	chr9:104153600-104157400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:104153600-104159000	Weak transcription	Left Ventricle	heart

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